Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0694
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.12
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 29 0.62
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 29 0.62
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 28 0.82
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 1.4
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 1.9
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 27 1.9
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil... 27 2.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 3.3
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 3.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 3.3
SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I... 26 4.4
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 4.4
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 5.8
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 25 5.8
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 25 5.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.7
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 7.7
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 7.7
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 25 7.7
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.1 bits (67), Expect = 0.12
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 254 SIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDS-KTKKR 430
++KD+ VLQ+ N +++ +K E +N E + + + ++N+S KT
Sbjct: 49 ALKDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNENESLKTNLE 108
Query: 431 GQNK 442
QNK
Sbjct: 109 NQNK 112
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.62
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +2
Query: 218 THKYEEFQRRSLSIKDEYVLQKSNIIEEKS--YNLEKRKLDESSASFDDNN-LEFEKTTV 388
T + E Q+ +K + S + + KS + K+ L S +F D+N F+K
Sbjct: 116 TARLENEQKSYEEMKQNMAINNSRLADLKSKLHPYLKKGLKISHDNFSDSNDFSFQKKLN 175
Query: 389 DITEDKNDSKTKKRGQNKSRPKIF 460
TED N SKT K + K F
Sbjct: 176 --TEDSNTSKTSTLDMYKEKLKPF 197
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 28.7 bits (61), Expect = 0.62
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 329 LDESSASFDDNNLEFEKTTVD--ITEDKNDSKTKKRGQNK 442
++E A + N E+E T V+ IT K + TKK G+N+
Sbjct: 155 IEEPQARWLSENPEYEVTKVEKIITSQKENQGTKKEGKNE 194
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 266 EYVLQKS-NIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKK 427
EY KS +II E S+N R+LD+S D+N + T + + +N +K
Sbjct: 86 EYTASKSPSIISEASHNSPSRELDDSG---DENTSKLTGTKQSMLKARNRQAAQK 137
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +2
Query: 254 SIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRG 433
S++ E + + + K+KL+++SA DN+ ++ D D+ KK+
Sbjct: 18 SLQSEIESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLKPEDDEVDEEVVPVKKKP 77
Query: 434 QNKSR 448
KS+
Sbjct: 78 SKKSK 82
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 239 QRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITED--KND 412
+ ++ + +E L K E+ E++K+ E + + + + + +++D K
Sbjct: 880 KEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQS 939
Query: 413 SKTKKRGQNKSRPKIFKDGKES 478
K KK+ + K + K ++ +S
Sbjct: 940 GKKKKKDRKKRKSKSKQESSDS 961
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +2
Query: 305 SYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRPKIFKDGKESKP 484
S ++ KRKL+ ++ + EK D +DK DS K + S+ ++ E+ P
Sbjct: 166 SDDIMKRKLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASP 225
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 299 EKSYNLEKRKLDESSASFDDNNLEF---EKTTVDITEDKNDSKTKKRGQNKSRPKIFKDG 469
EKS N KL E++ +F++ EF EK+ + ++++ +K Q + ++ +
Sbjct: 251 EKSLNERATKLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELI-NS 309
Query: 470 KESKPCPTVLDVEL 511
E K L+ +L
Sbjct: 310 LEKKVSDIALEKQL 323
>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 371 ILNCYHQMKRNSHLVYVFQDCMIFLQLC-WIFVT 273
+++ YHQ + +H++ +F+D + +Q+ W+ +T
Sbjct: 26 LISVYHQFQTKNHVLDIFEDVIPSIQVYGWLTMT 59
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 221 HKYEEFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITE 400
H+++E Q+R ++++E K + + S LE+ K+ E+ E K + + E
Sbjct: 620 HEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKE 679
Query: 401 DK----NDSK 418
+ ND+K
Sbjct: 680 SELVKSNDNK 689
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 3.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = +2
Query: 332 DESSASFDDN----NLEFEKTT----VDITEDKNDSKTKKRGQ-NKSRPKIFKDGKESKP 484
D S+DD+ N + TT V + +D+ K++ Q NK +P F G SKP
Sbjct: 194 DSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEKSQENKPKPTPFGSGGPSKP 253
Query: 485 CP 490
P
Sbjct: 254 TP 255
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 245 RSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVD 391
+S DEY KS ++ Y R L+E + S+ D+ +FE+ + D
Sbjct: 54 KSFPCYDEYDEIKSPDDQKVEYMKTLRTLEEDAFSYTDSVYDFEERSFD 102
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 3.3
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 386 Q*FSQILNCYHQMKRNSHLVYVFQDCMIFLQLCWIFVTHIHLLLTNSCVGILHIYVL 216
Q ++LNC +RN L +FQD + F+ +T + + C I YVL
Sbjct: 39 QKIEEVLNCKDTKQRNVSLEDIFQDFLNFI------ITKNQEMFSMDCNSICKSYVL 89
>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 25.8 bits (54), Expect = 4.4
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 260 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQ 436
+DE ++EE+ LE +DE+ S + E +T ITED SKT + G+
Sbjct: 6 EDEAFGMDGAVMEEEVDELEM--IDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGK 62
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 4.4
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 233 EFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKND 412
E +R +L + E ++Q S KS NL+ D+S + D++ L +K T D + +N
Sbjct: 150 EKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLA-DESELS-KKYTSD-RKIRNA 206
Query: 413 SK 418
SK
Sbjct: 207 SK 208
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +2
Query: 287 NIIEEKSYNLEKRKLDESSASFDDNNL--------EFEKTTVDITEDKNDSKTKKRGQNK 442
N+ EE+ + +++LDE DDN E++++ +D+N+ + R + K
Sbjct: 42 NVSEEEYRKIVRQRLDEDDFVVDDNGAGYVDNGYDEWDQSHYSDEDDENEKGSSGRKRKK 101
Query: 443 SR 448
S+
Sbjct: 102 SK 103
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 181 GTCVINSNYSEHNT*I*RIPTQEFVNKR 264
G+CV+ +N NT + ++P +NKR
Sbjct: 34 GSCVLANNDINENTVLLKLPPNILINKR 61
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 371 ILNCYHQMKRNSHLVYVFQDCMIFLQL 291
+LNCY + ++ V VF+D +IF ++
Sbjct: 414 LLNCYSLLNVLANYVVVFKDRLIFQEI 440
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 392 ITEDKNDS-KTKKRGQNKSRPKIFKDGKESKPCPTV 496
+ +D N K K+RGQNK R KI + + CP +
Sbjct: 17 VKQDGNKKRKRKERGQNKRREKIHVK-ENNALCPAI 51
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 7.7
Identities = 21/90 (23%), Positives = 40/90 (44%)
Frame = +2
Query: 215 ITHKYEEFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDI 394
+T + R ++ + +L+K+ KS + E ++ + DDN+ T+
Sbjct: 939 LTEQQMRIDRWNIFEERANLLRKAKDPSPKSAS-ESSSFYQNGSDIDDNDSNSSNTSNHT 997
Query: 395 TEDKNDSKTKKRGQNKSRPKIFKDGKESKP 484
TE+ N + K N+S F+D S+P
Sbjct: 998 TENANAQQRKLEDLNRS----FEDFLGSRP 1023
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 254 SIKDEYVLQKSNIIEE---KSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDK 406
S K E + Q IIEE + +LE+ + ESSA+ + N + + EDK
Sbjct: 508 SEKTETIAQLEQIIEELHEELRSLEEESIKESSATQQNENQHKRSSRKLLYEDK 561
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 7.7
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +2
Query: 332 DESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTVLDVEL 511
D A NN+E E DI + +T+ K R K + K+ KP T DVE
Sbjct: 284 DPVKALTSTNNVEEEDPAEDIGKIIASGQTRAYLAQKEREKNGESEKDEKPDNT--DVEF 341
Query: 512 Q 514
Q
Sbjct: 342 Q 342
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 305 SYNLEKRKLDESSASFDDNNLEFE 376
+YN K + +SS+S+ DNN + E
Sbjct: 489 TYNTVKANVPQSSSSYTDNNKQKE 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,028
Number of Sequences: 5004
Number of extensions: 34759
Number of successful extensions: 159
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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