Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0694
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57515| Best HMM Match : CBFNT (HMM E-Value=3.3) 33 0.12
SB_28346| Best HMM Match : BOP1NT (HMM E-Value=8.2e-14) 33 0.16
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 33 0.16
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 31 0.49
SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2) 31 0.49
SB_22046| Best HMM Match : PPV_E1_N (HMM E-Value=0.61) 31 0.49
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 31 0.86
SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_19255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 29 2.6
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 29 2.6
SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 29 3.5
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037) 28 4.6
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4) 28 4.6
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_8200| Best HMM Match : ShTK (HMM E-Value=5.7) 28 4.6
SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0) 28 4.6
SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3) 28 4.6
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_39776| Best HMM Match : Acetyltransf_1 (HMM E-Value=1e-23) 28 6.1
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23) 27 8.0
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 27 8.0
>SB_57515| Best HMM Match : CBFNT (HMM E-Value=3.3)
Length = 213
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 230 EEFQRRSLSIKDEYVLQKS-NIIEEKSYNLEKRKL-DESSASFDDNNLEFEKTTVDITED 403
E+F+ ++++ ++S + ++K +K K E+S + D+ EKT + + E+
Sbjct: 113 EDFEESPKEVEEKAKKRRSFGMFKKKDKESDKDKAGSETSLNAADDEETKEKTEIAVEEE 172
Query: 404 KNDSKTKKRGQNKSRPKIFKDGKESK 481
K + K+ + P DGKE K
Sbjct: 173 KEGEEFKREEAAEETPAEVADGKEKK 198
>SB_28346| Best HMM Match : BOP1NT (HMM E-Value=8.2e-14)
Length = 258
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = +2
Query: 248 SLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKK 427
SL D + + + +EE N+E+ D+++ +NN+E +K + K +++ K
Sbjct: 47 SLFQDDSHGEEDDDDVEEDEDNIEEDDDDDANKDSKENNIEHDKN----DDQKKNTERGK 102
Query: 428 RGQNKSRPKIFKDGKESKPCPTVLDVE 508
+ + P I KD K + V D E
Sbjct: 103 KPSKVNTPNIIKDNKLREAEKDVDDTE 129
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/80 (21%), Positives = 36/80 (45%)
Frame = +2
Query: 275 LQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRPK 454
+QK EE+S + E++K + SS ++ +DK D K ++ P+
Sbjct: 463 IQKERTEEEESSSKEEKKQESSSKEEKKQESSSKEEKKQEKDDKKDDKEGRKASKSPAPR 522
Query: 455 IFKDGKESKPCPTVLDVELQ 514
++ KP P +++++
Sbjct: 523 SDSRKEKEKPAPLKSELDIR 542
>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 32.7 bits (71), Expect = 0.21
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +2
Query: 224 KYEEFQRRSLSIKD--EYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDIT 397
KY++ + + +KD E +++K + + N E+ K ++ A DDN+ E E+ T +
Sbjct: 759 KYKKVDAK-IDVKDNEETLIEKVDAKSNGNEN-EQMKTEQGDAGIDDND-EGERKTAKVD 815
Query: 398 EDKNDSKTKKRGQNKSRPKI--FKDGKE 475
ND++ K+ +++ KI DGK+
Sbjct: 816 AKNNDNENKQMNRDQGDGKIDDEDDGKK 843
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +2
Query: 227 YEEFQRR-SLSIKDEYVLQKS----NIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVD 391
Y +RR S DE ++ K NI E + +L ++++ +D+ N T
Sbjct: 811 YTSSERRFSWKAGDEMIMDKPPPQINITETQDNSLGDLQIEDVEERYDEENTTIGPTATT 870
Query: 392 ITEDKNDSKTKKRGQNKSRPK 454
+ + K+D KT ++G+ PK
Sbjct: 871 VEQPKDDKKT-RQGRKTPAPK 890
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 31.5 bits (68), Expect = 0.49
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +2
Query: 212 SITHKYEEFQRRSLSIKDEYVLQKSNIIEEK--SYNLEKRKLDESSASFDDNNLEFEKTT 385
S+T + E Q R +++E +K +E+K N +KRK +E + + E E+
Sbjct: 199 SVTQRNNEIQERLKQLEEEEEARKRAELEDKMRRENEKKRKEEERAEAELKKKEEEERQR 258
Query: 386 VDITEDKNDSKTKKR 430
+ KND K KK+
Sbjct: 259 RAEEKRKNDEKEKKK 273
>SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2)
Length = 172
Score = 31.5 bits (68), Expect = 0.49
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 233 EFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLD 334
EF R+ L KDE + + NII+E+ ++EKR+L+
Sbjct: 124 EFLRKELRRKDEVIREYENIIKERE-DMEKRELE 156
>SB_22046| Best HMM Match : PPV_E1_N (HMM E-Value=0.61)
Length = 362
Score = 31.5 bits (68), Expect = 0.49
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 284 SNIIEEKSYNLEKRKLDESSASFDDNN-LEFEKTTVDITEDKNDSKTKKRGQNKSRPKIF 460
+N+ EK Y + +L + + DD + +E K V I++ + +++ G+N P+I
Sbjct: 240 NNVAVEKKYTINAEELHGTGGTIDDRDAMEGGKGEVYISQIEEENENGNEGENAIPPEIP 299
Query: 461 KDGKESK 481
D +K
Sbjct: 300 PDQDNTK 306
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 30.7 bits (66), Expect = 0.86
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +2
Query: 266 EYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKND--------SKT 421
EY +EKS +KRK ++ + DD EKT + ED D T
Sbjct: 1518 EYEAMMKAAADEKSKEKKKRKKEDEATRSDDGT--DEKTEDSMQEDAKDLDSSNTASDTT 1575
Query: 422 KKRGQNKSRPK 454
K++G+NK + K
Sbjct: 1576 KEKGKNKEKDK 1586
>SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 219 HINMKNSNAGVCQ*KMNMCYKNPT*LKKNHTILKNVN 329
++N+ +N VC+ +N+C N + N + NVN
Sbjct: 12 NVNVCKNNENVCENNVNVCENNENVCENNENVNNNVN 48
>SB_19255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/70 (21%), Positives = 36/70 (51%)
Frame = +2
Query: 266 EYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKS 445
+Y+L + ++ +L + + + D+ + +FE T D+ E D++ K G+ +
Sbjct: 110 QYLLDGLEEMAVETLSLLADVASKMATAADELHTDFEAATEDVIEALEDTQRAKGGEEER 169
Query: 446 RPKIFKDGKE 475
+ K+ ++ KE
Sbjct: 170 KKKMEQERKE 179
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +2
Query: 281 KSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRPKIF 460
K+N +E K + +++ + L FE ++ + K+D+ +K G++K++ ++F
Sbjct: 439 KANKLESKIHKWQRKHPSVDKQNRTSAFLAFEADNLEEVQGKHDTVPEKFGRSKAQLELF 498
Query: 461 K 463
K
Sbjct: 499 K 499
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 29.1 bits (62), Expect = 2.6
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 296 EEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRPKIFKDGKE 475
E K +K K S + + N+E EK T+DK TKK+ +N S+ +DG+E
Sbjct: 388 ERKKKTPKKNKNQLDSENSNTGNVENEKKG---TKDK----TKKKSKNNSKNIEEEDGRE 440
Query: 476 SKPCPTVL---DVELQNN*K 526
KP T + DV + NN K
Sbjct: 441 -KPKETRIEKTDVTIDNNKK 459
>SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 278 QKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSR 448
Q+ N E SY++EK D+ + DD+N ++++ + + N+SK K K R
Sbjct: 168 QQRNRPAEVSYDIEKSDYDDDNG--DDDNYDYDEEE-ESNINNNESKKKASSNLKER 221
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 260 KDEYVLQKSNIIEEKSYNLEKR-----KLDESSASFDDNNLEFEKTTVDITEDKNDSKTK 424
K L+K + +EK + +R K DE +D+ E E + ED+ +
Sbjct: 464 KKSRTLRKLTVAKEKGASERRRRGRSPKSDEQKKKDEDSKPE-EAKPEEPKEDEKSKPEE 522
Query: 425 KRGQNKSRPKIFKDGKESKPCPTVLDVE 508
+ + +++P+ K +E+KP T ++ E
Sbjct: 523 TKAEEEAKPEAPKAEEEAKPGETKVEEE 550
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 248 SLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDS-KTK 424
SL+I ++ +K + + K ++ +K+K + + K + ++DK D T
Sbjct: 144 SLTISNDLNSEKKDKKKHKKHSKDKKKKKHKKEKKREKDKHKHKQEKESSDDKPDELSTP 203
Query: 425 KRGQNKSRPKIFKDGKESK 481
K+ K PK DG+E K
Sbjct: 204 KKISEKGSPK--GDGRERK 220
>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
Length = 396
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Frame = +2
Query: 224 KYEEFQRRSLSIKDEYVLQKSNIIEEKSYNLEK------RKLDESSASFDDNN------- 364
KY+E Q +S ++++Y Q + + E + LE+ KL E +A D +
Sbjct: 25 KYQELQAKSQKMQEDYERQLTEMEEAREQVLEELTEYYENKLQEKTAQLDQSQEESRQQL 84
Query: 365 LEFEKTTVDITED 403
E+E+T I ED
Sbjct: 85 REYEETKKQIEED 97
>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
Length = 220
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 311 NLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSK-TKKRGQNKSRPKIFKDGKESKPC 487
N+EK + D +S+ ++ + ++ D ++ND K T+K +K++ K+ K ++ K
Sbjct: 105 NMEKNEHDGNSSDSGNSEVTEQEHDEDANSEENDDKPTRKTKLDKAQRKLNKRLRQKKKN 164
Query: 488 PTVLDVE 508
V + E
Sbjct: 165 KNVANGE 171
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 398 EDKNDSKTKKRGQNKSRPKIFKDGKESKPCPT 493
E + D K KKR + K R K + S CP+
Sbjct: 1191 EHRKDKKKKKRSEEKERKKHKLEAASSSACPS 1222
>SB_8200| Best HMM Match : ShTK (HMM E-Value=5.7)
Length = 84
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 219 HINMKNSNAGVCQ*KMNMCYKNPT*LKKNHTILKN 323
++NM +N VC+ +NMC N + N + +N
Sbjct: 40 NVNMCKNNVNVCKNNVNMCKNNVNVCENNVNVCEN 74
>SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 939
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +2
Query: 278 QKSNIIEEKSYNLEKRKLD------ESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQN 439
+K++II E+ +E + D S S D+ + K EDK D+ T++R +N
Sbjct: 26 EKASIIGEEQEAVEDKGKDFGSDDEPGSVSIGDDGTDLVKNDELEPEDKVDNSTQERAEN 85
Query: 440 KSRPKIFKDGKESKP 484
+ G KP
Sbjct: 86 REDKVKIDPGANDKP 100
>SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)
Length = 471
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 302 KSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRPKIFKDG--KE 475
K N +++K E + DN +K + + +ED+ +K++ + + + K +G K+
Sbjct: 259 KPKNKKRKKKKEKKTNETDNESSIKKKSCEDSEDEEHLPSKEKKKKRKKSKDSSEGYIKQ 318
Query: 476 SK 481
SK
Sbjct: 319 SK 320
>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +2
Query: 230 EEFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKN 409
EE +RS K + S I ++ +K+K DN+ +KTT +KN
Sbjct: 106 EERSKRSSGDKSD----DSEIASKEVKKDKKKKNYSKEKGSSDNSGSGDKTT---KPEKN 158
Query: 410 DSKTKKRGQNKSRPKIFKDGKESKP 484
D+K K +G + K K KP
Sbjct: 159 DAKKKDKGDKPEKNYAKKKDKGDKP 183
>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 299 EKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKN-DSKTKKRGQNK 442
++ Y E + D S+ D N E E TVD T KN + KTKKR +K
Sbjct: 208 DRGYESEDAR-DNSTVKTDKN--EGEGPTVDNTRKKNQEGKTKKRHGSK 253
>SB_39776| Best HMM Match : Acetyltransf_1 (HMM E-Value=1e-23)
Length = 237
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -3
Query: 520 IVLKFDIKDSGTWFAFLAIFEYFWSRFVLASLFSFRIVFI-LSY--VYSSFLKF 368
+VL + K++ +F F A + WS ++LA IV + L Y +Y +KF
Sbjct: 51 LVLPWYAKNAAVFFVFAAAVAFQWSLWILAVYLLVCIVLVALLYINIYLQIMKF 104
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 248 SLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKK 427
S+++K+E + +N ++ K+ K K D++ + D +KT + +DK + K
Sbjct: 375 SMAMKEELHSKGTNTVKNKT----KNKKDKTKNNKDKTKENKDKTKEN--KDKTKNNKDK 428
Query: 428 RGQNKSRPKIFKD-GKESK 481
+NK + K KD KE+K
Sbjct: 429 TKENKDKTKENKDKTKENK 447
>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +2
Query: 338 SSASFDDNNLEFEKTTVDITEDKND---SKTKKRGQNKSRPKI 457
+SA D+++ + EK D E+K D +KTKK+ + K++ KI
Sbjct: 428 TSADEDEDDDKDEKEDEDELEEKEDWSKNKTKKKTKEKTKEKI 470
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 219 HINMKNSNAGVCQ*KMNMCYKNPT*LKKNHTILKN 323
++N+ +N VC+ +N+C N + N + KN
Sbjct: 3413 NVNVCENNENVCENNLNVCENNENVCENNVNVCKN 3447
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 219 HINMKNSNAGVCQ*KMNMCYKNPT*LKKNHTILKN 323
++NM +N VC+ +N+C N + N + +N
Sbjct: 3448 NVNMCKNNVNVCENNVNVCENNENVCENNLNVCEN 3482
>SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23)
Length = 880
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 332 DESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRPKI--FKDGKESKPCPTVLDV 505
D++ AS D + ++ +K+ T K+ N S+ I K+ K+ + TVL++
Sbjct: 205 DDADASESDGEEDTDQAEEPEWTNKSSKATGKKKTNTSKKTIKNAKEPKKRRNALTVLEI 264
Query: 506 ELQNN*KFVNI 538
+ + K VNI
Sbjct: 265 KSSIHNKLVNI 275
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 260 KDEYVLQKSNIIEEK-SYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQ 436
KD+ +K EEK + E++K+++S S D E+T V+ E K D + G+
Sbjct: 1599 KDDTASEKKESSEEKMEVDGEEQKVEKSPESVDKTE-GHERTDVEDDEKKADDSNEDIGK 1657
Query: 437 NKSRPKIFKDGKESK 481
+D K+ +
Sbjct: 1658 KDESRDQAEDAKKEE 1672
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 260 KDEYVLQKSNIIEEK-SYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQ 436
KD+ +K EEK + E++K+++S S D E+T V+ E K D + G+
Sbjct: 178 KDDTASEKKESSEEKMEVDGEEQKVEKSPESVDKTE-GHERTDVEDDEKKADDSNEDIGK 236
Query: 437 NKSRPKIFKDGKESK 481
+D K+ +
Sbjct: 237 KDESRDQAEDAKKEE 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,020
Number of Sequences: 59808
Number of extensions: 235508
Number of successful extensions: 1098
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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