Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0694
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28770.1 68416.m03591 expressed protein 36 0.025
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 33 0.100
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 33 0.17
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 33 0.17
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 31 0.40
At5g27220.1 68418.m03247 protein transport protein-related low s... 31 0.53
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 31 0.70
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 30 1.2
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 30 1.2
At1g76740.1 68414.m08931 expressed protein weak similarity to fi... 29 2.1
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 29 2.1
At5g18740.1 68418.m02224 expressed protein predicted proteins - ... 29 2.8
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 29 2.8
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 29 2.8
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 29 2.8
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 29 2.8
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 29 2.8
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 28 3.7
At1g56660.1 68414.m06516 expressed protein 28 3.7
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 28 5.0
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 28 5.0
At1g03080.1 68414.m00282 kinase interacting family protein simil... 28 5.0
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 27 6.5
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro... 27 6.5
At3g12190.1 68416.m01520 hypothetical protein 27 6.5
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 27 6.5
At5g64905.1 68418.m08164 expressed protein 27 8.7
At5g62240.1 68418.m07815 expressed protein various predicted pro... 27 8.7
At4g21680.1 68417.m03140 proton-dependent oligopeptide transport... 27 8.7
At3g60380.1 68416.m06753 expressed protein 27 8.7
At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family pr... 27 8.7
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 27 8.7
At1g03820.1 68414.m00363 expressed protein similar to arabinogal... 27 8.7
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 35.5 bits (78), Expect = 0.025
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +2
Query: 260 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQN 439
K ++ KS EE ++EK + S+ +D N + + V + + ++D K KK +
Sbjct: 1102 KKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEE 1161
Query: 440 KSRPKIFKDGKESK 481
KS K + K K
Sbjct: 1162 KSETKEIESSKSQK 1175
Score = 33.1 bits (72), Expect = 0.13
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +2
Query: 233 EFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFE----KTTVDITE 400
E +++ + K+ + S + EE N EK++ E SAS + E+E KT + +
Sbjct: 970 ELKKQEDNKKETTKSENSKLKEENKDNKEKKE-SEDSASKNREKKEYEEKKSKTKEEAKK 1028
Query: 401 DKNDSKTKKRGQNKSRPKIFKDGKE 475
+K S+ KKR + S + K KE
Sbjct: 1029 EKKKSQDKKREEKDSEERKSKKEKE 1053
Score = 30.3 bits (65), Expect = 0.93
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 284 SNIIEEKSYNLEKRKLDESSA--SFDDNNLEF-EKTTVDITEDKNDSKTKKRGQNKSRPK 454
S I++ K N + K E S +DNN+E E T ++ KND ++K + K K
Sbjct: 644 SKIVDNKGGNADSNKEKEVHVGDSTNDNNMESKEDTKSEVEVKKNDGSSEKGEEGKENNK 703
Query: 455 IFKDGKE 475
+ K+
Sbjct: 704 DSMEDKK 710
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 33.5 bits (73), Expect = 0.100
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 245 RSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDD-NNLEFEKTTVDITEDKNDSKT 421
+S K++ S ++E + + ++ SAS DD +N E K ++ ++K
Sbjct: 380 QSAKAKEKLSESSSEVVENQQTTEDTTEVSADSASMDDRSNAEQPKEKEEVEKEKAKDTK 439
Query: 422 KKRGQNKSRPKIFKDGKE 475
K++G+ K K + KE
Sbjct: 440 KEKGKEKDSEKKMEHEKE 457
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 296 EEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRPKIFKDGKE 475
E++ Y LEKRK +E +F++ K K+ G NK + ++ D E
Sbjct: 655 EQRKYQLEKRKQEEELRRLKQEEEKFQRI-------KEQWKSSTPGSNKRKDRVEDDDGE 707
Query: 476 SKP 484
SKP
Sbjct: 708 SKP 710
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 296 EEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRPKIFKDGKE 475
E++ Y LEKRK +E +F++ K K+ G NK + ++ D E
Sbjct: 867 EQRKYQLEKRKQEEELRRLKQEEEKFQRI-------KEQWKSSTPGSNKRKDRVEDDDGE 919
Query: 476 SKP 484
SKP
Sbjct: 920 SKP 922
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 31.5 bits (68), Expect = 0.40
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 233 EFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKND 412
E + + KDE ++ +EK +++ ++ DE S DD+ + ++ + D EDK +
Sbjct: 234 EVEDKKTESKDENEDKEEEKEDEKEESMDDKE-DEKEESNDDDKEDEKEESNDDKEDKKE 292
Query: 413 --SKTKKRGQNKS 445
K+ KRG+ K+
Sbjct: 293 DIKKSNKRGKGKT 305
Score = 31.1 bits (67), Expect = 0.53
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 257 IKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITED-KNDSKTKKRG 433
+ + V K ++++ + E+ K DE S DD E E++ D ED K +S K
Sbjct: 230 VAEPEVEDKKTESKDENEDKEEEKEDEKEESMDDKEDEKEESNDDDKEDEKEESNDDKED 289
Query: 434 QNKSRPKIFKDGK 472
+ + K K GK
Sbjct: 290 KKEDIKKSNKRGK 302
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 31.1 bits (67), Expect = 0.53
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 254 SIKDEY--VLQKSNIIEE--KSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKT 421
S+KD Y LQ I E+ KS+ E +K+ +S F E K +TE + +
Sbjct: 515 SVKDTYRECLQNWEIKEKELKSFQEEVKKIQDSLKDFQSKEAELVKLKESLTEHEKELGL 574
Query: 422 KKRGQNKSRPKI-FKDGK 472
KK+ + KI KD K
Sbjct: 575 KKKQIHVRSEKIELKDKK 592
>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 499
Score = 30.7 bits (66), Expect = 0.70
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 224 KYEEFQRRSLSIKDEYVLQKSNI--IEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDIT 397
K E L D+ V + N+ ++E NLEK+ DE + D + + ++ T +
Sbjct: 399 KLREQVEERLDFYDKGVAPRKNVDVMKEVLENLEKK--DEGEKTVDASEKKKKRKTEEKE 456
Query: 398 EDKNDSKTKKRGQNKSR 448
E+K + K+KK+ + KS+
Sbjct: 457 EEKEEEKSKKK-KKKSK 472
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +2
Query: 212 SITHKYEEFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVD 391
SI K +E RS S V K ++ K N K+K +E D E +K D
Sbjct: 99 SIYKKNKEKGSRSSSSSSSAVWMK---LQRKKENEAKKKEEEEKERKDMEKEEKKKDKED 155
Query: 392 ITEDKNDSKTKKRGQNKSRPK 454
+DK D K K + K K
Sbjct: 156 KKKDKEDKKKAKVQKEKKEKK 176
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 230 EEFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKN 409
EEF + +D+ +L+K N I++K LE KL E +F E+ ++ ED+N
Sbjct: 290 EEFD--DMKERDDILLEKLNAIDKK---LEI-KLSELDHTFGKKGKRLEEEIRELAEDRN 343
Query: 410 DSKTKKR 430
KKR
Sbjct: 344 ALTEKKR 350
>At1g76740.1 68414.m08931 expressed protein weak similarity to
fimbriae-associated protein Fap1 (GI:3929312)
[Streptococcus parasanguinis]; weak similarity to 1MDa_1
protein (GI:24620455) [Caenorhabditis elegans]
Length = 1532
Score = 29.1 bits (62), Expect = 2.1
Identities = 24/94 (25%), Positives = 44/94 (46%)
Frame = +2
Query: 239 QRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSK 418
+R +S+ D ++KSN+ E + + SF +EFE+ ++ D+ K
Sbjct: 402 ERAGVSVGD---VKKSNVNNEMQIRVRVTRNSSRHHSFKAP-IEFERNLIEKKSDETFVK 457
Query: 419 TKKRGQNKSRPKIFKDGKESKPCPTVLDVELQNN 520
+ KRG + K G+ ++P D+E Q+N
Sbjct: 458 SSKRGTRR-----MKRGRSAEPGK---DIETQSN 483
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +2
Query: 257 IKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDI 394
+ ++Y L +++IEE+ +E K+ ++ + NNLE++ +D+
Sbjct: 10 LAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDM 55
>At5g18740.1 68418.m02224 expressed protein predicted proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 609
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 317 EKRKLDESSASFDDNNLEFEKTTVDITEDKN-DSKTKKRGQNKSRPKIFKDGKE 475
EKRK +E + N + V++++D+N DSK N + F GK+
Sbjct: 66 EKRKRNECGGICNTENRSMTEDVVNLSKDRNVDSKRSAFSDNGDATQEFGSGKQ 119
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 239 QRRSLSI--KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKND 412
QR +L ++E + + I EEK + +E++ D+N LE +K + + E D
Sbjct: 440 QRHALGAARREEALAEARQIREEKE---RSKTGEEANGVLDNNRLEKKKNSAQVLESSED 496
Query: 413 SK 418
SK
Sbjct: 497 SK 498
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 293 IEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKR---GQNK-SRPKIF 460
+E + + ++ + D+ D+ + E E+ D ED+ +SKTKK+ G K R +I
Sbjct: 300 MEAEDFEIDDDEEDDIDEDEDEEDEEDEEDDDD--EDEEESKTKKKPSIGNKKGGRSQIV 357
Query: 461 KDGKESKPCP 490
+GK+ + P
Sbjct: 358 GEGKQDERPP 367
>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
low similarity to SP|P25583 Karyogamy protein KAR4
{Saccharomyces cerevisiae},
(N6-adenosine)-methyltransferase [Mus musculus]
GI:10179948; contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 775
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 296 EEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKS 445
E++ +L+ + SS S + E K+ VD+ DSK ++ G+ ++
Sbjct: 29 EKRRMSLKASDFESSSRSGGSKSKEDNKSVVDVEHQDRDSKRERDGRERT 78
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 245 RSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVD---ITEDKNDS 415
R +KD ++ I + NL+K+K DES+++ E E +T + I E D
Sbjct: 514 REERVKDSSRKKEEAISSSREENLDKQKKDESTSN-RKRKAEGECSTAETESIEEHSKDR 572
Query: 416 KTKKRGQNKSRPKIFKDGKESK 481
+ KK N + + +D K K
Sbjct: 573 RGKKEETNSNCREERRDKKMKK 594
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 251 LSIKDEYVLQKSNII--EEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITE 400
L K + + ++ II EEK +LEK++L S +D E EK ++T+
Sbjct: 446 LEAKLKTIKEREKIIQAEEKRLSLEKQQLLSDKESLEDLQQEIEKIRAEMTK 497
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 293 IEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKR-GQNKSRPKIFKDG 469
+ +KS + ++ ++ S +D E TVD+ ++ TKK+ G + S K K G
Sbjct: 867 VGKKSSDSGSVEMKPTAESLEDVKDENASKTVDVKQETGSPDTKKKEGASSSSKKDTKTG 926
Query: 470 KESK 481
++ K
Sbjct: 927 EDKK 930
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +2
Query: 224 KYEEFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKL--DESSASFDDNNLEFEKTTVDIT 397
K EE ++ K++ + + EEK +K K DES + + EK D++
Sbjct: 107 KVEEHEKEHKKGKEK---KHEELEEEKEGKKKKNKKEKDESGPEEKNKKADKEKKHEDVS 163
Query: 398 EDKNDSKTKKRGQNKSRPKIFKDGKESKPCP 490
++K + + + +NK + K +E K P
Sbjct: 164 QEKEELEEEDGKKNKKKEKDESGTEEKKKKP 194
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 27.9 bits (59), Expect = 5.0
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +2
Query: 218 THKYEEFQRRSLSIKDEYVLQKSNIIEEKSYNLEK-RKLDESSASFDD-NNLEFEKTTVD 391
T YEE +R SL I E ++ IIE Y E+ R+LDE L+ ++ +++
Sbjct: 165 TRVYEERRRESLRIMQETGNKRKQIIEVVHYLDERLRELDEEKEELRKYQQLDKQRKSLE 224
Query: 392 IT---EDKNDSKTKKRGQNKSRPK 454
T ++ +D++ K +R K
Sbjct: 225 YTIYDKELHDAREKLEQVEVARTK 248
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 27.9 bits (59), Expect = 5.0
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 212 SITHKYEEFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLE----FEK 379
S+ + E +R + + D V+QK N LEKR+ + S +FD N L F
Sbjct: 1066 SVEEEILERAKRKM-VLDHLVIQKLNA----EGRLEKRETKKGS-NFDKNELSAILRFGA 1119
Query: 380 TTVDITEDKNDSKTKKR 430
+ EDKND ++KKR
Sbjct: 1120 EEL-FKEDKNDEESKKR 1135
>At1g03080.1 68414.m00282 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +2
Query: 230 EEFQRRSLSIKDEY-VLQKSN--IIEEKSYNLEKR-KLDESSASFDDN 361
E+F R+ L ++D+Y +LQ N ++EK+Y + +L+E +D+
Sbjct: 1068 EDFHRQVLQLRDDYTILQGDNNKTLDEKAYLTKSTLQLEEEKCKLEDD 1115
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +2
Query: 251 LSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTKKR 430
L KDE +L+K + +EK E +KL + + F ++ E+K K KK
Sbjct: 68 LKEKDE-ILRKKEVEQEK-LKTELKKLQKMKEFKPNMTFAFSQSLAQTEEEKKGKKKKKD 125
Query: 431 GQNKSRP 451
RP
Sbjct: 126 CAETKRP 132
>At3g32400.1 68416.m04142 formin homology 2 domain-containing
protein / FH2 domain-containing protein common family
members: At2g43800, At3g25500, At5g48360, At4g15200,
At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
thaliana];
Length = 488
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/75 (22%), Positives = 35/75 (46%)
Frame = +2
Query: 239 QRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSK 418
Q R ++K + L+ + ++ + E +K DE++ + D + E EK + N
Sbjct: 82 QTRKANLKPYHWLKLTRAVQGSLW-AEAQKSDEAATAPDFDISEIEKLFSAVNLSSNSEN 140
Query: 419 TKKRGQNKSRPKIFK 463
+ ++RPK+ K
Sbjct: 141 NGGKSGRRARPKVEK 155
>At3g12190.1 68416.m01520 hypothetical protein
Length = 269
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/62 (24%), Positives = 36/62 (58%)
Frame = +2
Query: 245 RSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDITEDKNDSKTK 424
+ + K++++ ++S+ +E K LEKR + ++A + E ++ +D + + +S+ K
Sbjct: 56 QEIESKEKHLEKRSHELESKGKILEKRAREINTADGFRRDFEEKQRKLDRLKREIESEEK 115
Query: 425 KR 430
KR
Sbjct: 116 KR 117
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -2
Query: 299 LQLCWIFVTHIHLLLTNSCVGIL-HIY---VLCSE*LLLITH 186
L+LCWI + H +L TN+ G+L +Y L E LL I H
Sbjct: 164 LRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLWIKH 205
>At5g64905.1 68418.m08164 expressed protein
Length = 96
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 338 SSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRP 451
SS S +D +++ ++ + ED + K RG+NK++P
Sbjct: 48 SSHSEEDESIDIKEEEEEEEEDGMTIEIKARGKNKTKP 85
>At5g62240.1 68418.m07815 expressed protein various predicted
proteins, Arabidopsis thaliana; expression supported by
MPSS
Length = 366
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 371 FEKTTVDITEDKNDSKTKKRGQNKSRPKIFKDGKESKP 484
+ +T D+++ K+ SKTK +RP +++KP
Sbjct: 108 YNQTVKDVSKKKSKSKTKTSNSTLTRPTASLLARQNKP 145
>At4g21680.1 68417.m03140 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 589
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 511 KFDIKDSGTWFAFLAIFEYFWSRFVLASLFS 419
+FD +DS + +A F YF+ L SLFS
Sbjct: 174 QFDAEDSVEGHSKIAFFSYFYLALNLGSLFS 204
>At3g60380.1 68416.m06753 expressed protein
Length = 743
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 377 KTTVDITEDKNDSKTKKRGQNKSR 448
KT D +ED+ ++K + RG+ KSR
Sbjct: 616 KTDGDSSEDRAEAKVESRGRTKSR 639
>At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; PMID: 12679534
Length = 428
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 332 DESSASFDDNNLEFEKTTVDITEDKNDSKTKKRGQNKSRP 451
DES+ ++NN +F+ I E + + K RG+ K++P
Sbjct: 179 DESNVGDENNNAQFDS---GIIEFSKEIRRKGRGKRKNKP 215
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 278 QKSNIIEEKSYNLEKRKLDESSASFDDNNLEFEKTTVDI----TEDKNDSKTKKRGQNKS 445
QK N+I + N E+ + ++ E +++ V TE+K+ ++ ++ +
Sbjct: 1079 QKENVIAKAELNTEEDSFKKVEEIEKQDHGELKRSMVQAKRQETEEKDKTRAMEKNETVE 1138
Query: 446 RPKIFKDGKESK 481
R K KDG K
Sbjct: 1139 RRKQTKDGSLGK 1150
>At1g03820.1 68414.m00363 expressed protein similar to
arabinogalactan-protein; AGP (GI:1087015) {Pyrus
communis}; similar to Protein E6. (SP:Q01197) {Gossypium
hirsutum}
Length = 222
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +2
Query: 212 SITHKYEEFQRRSLSIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLE--FEKTT 385
S T EEF++ + +E + EE+ + + L+E +++NN + TT
Sbjct: 85 SSTTTDEEFEKLMATFDEEKNTKLPEAFEEEEESEDSEDLNEPKDKYNNNNNNNGYTYTT 144
Query: 386 VDITEDKNDSKTKKRGQNKSRPKIFKDGK 472
+ ++ ++ Q S ++ ++GK
Sbjct: 145 NNYNDNGRGYGNEEEKQGMSDTRVMENGK 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,583,154
Number of Sequences: 28952
Number of extensions: 165020
Number of successful extensions: 777
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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