Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0693
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    28   1.6  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    28   1.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   6.6  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   6.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   8.7  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   8.7  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -3

Query: 204 GVPYL--VANCVVILRASVFPLAAFRSNSNARVLSCINVGITHGISTFSNFVVNNKSKSD 31
           G+P+   +A C V +R +VFP+      ++A+ L+ IN  +   +S  S       S+  
Sbjct: 112 GLPWWASIAACAVAMRIAVFPIMLKMMKTSAK-LAIINPKVAEHMSVLSKAKAEGNSELM 170

Query: 30  IQSSS 16
           +Q+++
Sbjct: 171 MQATT 175


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 56  TKLENVDMPWVIPTFMHDKTRALELLLNAAKGNTEALKITTQL 184
           TK EN D+P   P ++ D   AL       KG  +  K+T  L
Sbjct: 450 TKEENADVPVSSPDYLKDLVNALNTSKEQHKGAIDKEKLTEAL 492


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 370 ETQKERCLNAVNLLPVCPVIKDDDLIEIWKHCFR 471
           + ++  CL+A  L+ VC +  D  LI+  K  F+
Sbjct: 539 KNERIACLSASQLITVCHIFSDTTLIKPVKELFQ 572


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 29  MSLLDLLFTTKLENVDMPWVIPTFMHDKTRALELLLNAAKGNTEALKITTQL--ATRYGT 202
           +SLLD      +++  +  + P+F+H K RA  +       N E L    QL  A RY  
Sbjct: 323 LSLLDSWTEIDIDDA-LELLSPSFVHPKVRAYAVSRLETASNEELLLYLLQLVQALRYDN 381

Query: 203 P 205
           P
Sbjct: 382 P 382


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 632 RKHDTKNIQKLITFPANAIIITKNPEMS 715
           R H  KN++KL TF A   I  + P  S
Sbjct: 156 RPHSLKNVEKLHTFSAPYTISEETPSCS 183


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 569 NSKLEKFTHRLLFSFCCNVCIRKHDTKNIQKLITFPANAIIITKNPE 709
           N+K  K  H+L + +  N+ ++KH T  I      P    ++  NPE
Sbjct: 264 NTKYGK-PHKLTYDYAKNILMKKHKTLGITNP---PKEIFMVGDNPE 306


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 357 LSLNGNSKRKMLKCCKLV 410
           L+ NGN +   LKCC+L+
Sbjct: 91  LAKNGNPREVFLKCCELL 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,163
Number of Sequences: 5004
Number of extensions: 59739
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)