Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0693
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   9.3  

>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = -3

Query: 255 TYKFVCNKSGIISEITFGVPYLVANCVVILRASVFPLAAFRSNSNARVLSCINVGITHGI 76
           +++F  ++  +   I F VPY+         +S    ++  SNSN+   S  +   + G 
Sbjct: 92  SWRFKSSRMFVYILIAFLVPYVTCTSSSSSNSSRSSSSSSNSNSNSSSSSSSSSSSSSGS 151

Query: 75  STFSNFVVNNKSKSDIQSSS 16
           S+ SN   N+ S S   S+S
Sbjct: 152 SSSSNSNSNSNSNSSSSSNS 171


>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 684 ALAGKVISFCMFLVSCFLIQTLQQKLNKSLCVNFSSLLLD 565
           +LA KV+SFC  +     +QTL + L  +L  N +S  +D
Sbjct: 172 SLASKVMSFCFKVYGTSYLQTLLEPLVSNLVKNTTSFEVD 211


>SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 491 PIPKHLHLKQCFQISIKSSSLITGHTGNKFTAFKHLS 381
           P  KH+ LKQC  +S+KS  ++       F    H++
Sbjct: 511 PRLKHVELKQCPAVSVKSEEILIEKCPEVFVEIIHMT 547


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 321 ACGSFVTISTCRLSLNGNSKRKMLKCCKL 407
           ACG+ V+I+ C   L  N     ++CC L
Sbjct: 648 ACGNSVSITVCVRHLRENVNNSKIRCCFL 676


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,333,650
Number of Sequences: 59808
Number of extensions: 419800
Number of successful extensions: 1014
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)