Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0693
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 289 NPPTSLICAAWRAVLLSPFQRADYPLTETQKE--RCL 393
           +P  SL+C+   +V  SP   ++ PLT  +++  +CL
Sbjct: 29  DPVKSLVCSPDLSVFTSPACGSETPLTNIEEKTYQCL 65


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 427 IKDDDLIEIWKHCFRCKCLGIGCLTLPL*LLKRDKDYQN 543
           +++D++++ WK  F    LG+ C+   +  L + K   N
Sbjct: 100 LQNDEVLD-WKKIFDINLLGLTCMIQEVLKLMKKKGINN 137


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = -3

Query: 117 RVLSCINVGITHGISTFSNFVVNNKS 40
           R +  +++ + + IST ++FV+NN++
Sbjct: 337 RKMQEMSIEVPYWISTTTSFVLNNRA 362


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 708 SGFFVIIIALAGKVISFCM---FLVSCF 634
           S  FVI +A++  ++ FCM    +++C+
Sbjct: 87  SNLFVINLAISNFLMMFCMSPPMVINCY 114


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 259 VLVLLLKSASNPPTSLICAAWRAVLLSPF 345
           V+ LLL S   PPTSL+       LL  F
Sbjct: 276 VVFLLLVSKILPPTSLVLPLIAKYLLFTF 304


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 556 SIFNNSGNPCL 524
           S+FN+SGNP L
Sbjct: 363 SMFNDSGNPIL 373


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 708 SGFFVIIIALAGKVISFCM---FLVSCF 634
           S  FVI +A++  ++ FCM    +++C+
Sbjct: 53  SNLFVINLAISDFLMMFCMSPPMVINCY 80


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 204 GVPYLVANCVVILRASVFPLAAFRSNSNARVLSCI 100
           GV  ++ N  ++L    FP AAFR + ++    C+
Sbjct: 77  GVRRVLRNGTLVLLP--FPAAAFRQDVHSAAYRCV 109


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 204 GVPYLVANCVVILRASVFPLAAFRSNSNARVLSCI 100
           GV  ++ N  ++L    FP AAFR + ++    C+
Sbjct: 77  GVRRVLRNGTLVLLP--FPAAAFRQDVHSAAYRCV 109


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +1

Query: 445 IEIWKHCFRCK 477
           +E W+H F+C+
Sbjct: 427 VEFWEHHFQCR 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,660
Number of Sequences: 438
Number of extensions: 3917
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)