Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0692
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    27   2.7  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    27   2.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.8  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   6.3  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   8.3  
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    25   8.3  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 607 FGLQRPLDHSVSRSHNRKRNFP*RRGSTAR 696
           FG+Q+PL  S +++HN+ +N   R  S ++
Sbjct: 174 FGIQQPLASSNNKNHNQSKNPQNRSNSRSK 203


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 342 ACKRERYYQIANSLATPGTDVHLTTTRALILDNNLIINPDWS 467
           A K+ER+ +I+     P  +  L TT+  +L N   +  +WS
Sbjct: 95  ATKKERHIKISADTFLPLKNKPLITTKFTVLKNRNAVQLEWS 136


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 346 HASAGKLRTSNSSFCDFGSPPSPSAANDS 260
           +AS     TS+S    + SPPSPS+ +D+
Sbjct: 288 NASTRSTGTSSSMAHSYDSPPSPSSPSDA 316


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 579 DSSSCVISLF--SIGFSWSVRCFFIGLALYAVVLLCEQTWTNPGLLLDCYPKSRR 421
           DSSS   S F  S+ F++++ C FIG  L+  +   E+    P  ++D  PK  +
Sbjct: 3   DSSSSSTSAFVSSLVFNFAIFCAFIG--LFLCLRPREKHVYQPRCIIDTQPKEEK 55


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 280 EKEETRSRKRNYSKFSIYLPKHVNAKGITKLRIVW 384
           EKE  R     Y +    + KH+N+ G  +  + W
Sbjct: 276 EKERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKW 310


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = -2

Query: 340 SAGKLRTSNSSFCDFGSPPSPSAANDSQMIMGPRQNGSCCSDRRP---CTNAMKTLRGLP 170
           SAG+ RT ++S     +P  P   N        R+ GS    ++P     +  KTL  L 
Sbjct: 41  SAGRPRTLSTSMEASAAPTIPELKN-------LRRRGSLDEHKQPRKFLVDVDKTLNALL 93

Query: 169 *TSDSDLHCRCLEELNCQRHVNLGQGYLSGFGLQKL 62
            + D+D + +   E    + V+LG     G+ L +L
Sbjct: 94  ESEDTDRNMQITIEDTGPKVVSLGSASSGGYRLYEL 129


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 464 VQVCSHSKTTAYSASPIKKHLTDHENPIEKREITQDEE 577
           +QV   +K   +       ++TD  N +EKRE+  D E
Sbjct: 201 IQVSCRNKLVQWLIKINNMNITDQLNDVEKRELLYDLE 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,640
Number of Sequences: 5004
Number of extensions: 70664
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)