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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0692
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)               30   1.7  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_37108| Best HMM Match : AMP-binding (HMM E-Value=2e-09)             29   5.1  
SB_6542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 28   8.9  
SB_4860| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_25000| Best HMM Match : 7tm_1 (HMM E-Value=1.49995e-41)             28   8.9  

>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
          Length = 738

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 360 YYQIANSLATPGTDVHLTTTRALILDNNLIINPDWSKFVHTAK 488
           YY  A   +  G  + L TT   I DN LI+NPD    +H A+
Sbjct: 472 YYLFAADGSAHGLSIKLRTTLKRIADN-LILNPDADPSLHAAE 513


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 313  SSFCDFGSPPSPSAANDSQMIMGPRQNGSCCSDRRPCTNAMKTLRGLP 170
            S  C   + P PS  +  Q   GP  + S    + PC NA K  R  P
Sbjct: 2147 SQDCSQCNTPVPSICSAPQQASGPNSDTSTEDRQSPCENAAKVARVSP 2194


>SB_37108| Best HMM Match : AMP-binding (HMM E-Value=2e-09)
          Length = 488

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 192 IAFVQGRRSEQQLPFCRGPIIIWLSLAALGEGGDPKSQKELFEV 323
           +++ +G  + +  PF RG I+I  S   LG   +P+  +E FEV
Sbjct: 278 VSWEEGGYTIRDKPFARGEIVIGGSNVTLGYYKNPQKTQEDFEV 321


>SB_6542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 513 IGLALYAVVLLCEQTWTNPGLLLDCYPKSRRVSWSNGRQFPAWPD 379
           I L L  +V   E++W    + L+C+  S  +S S   Q+  WPD
Sbjct: 14  IPLLLVQLVRAAEESWDTAAIELNCH--SSHMSLSINLQYLQWPD 56


>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 556 RNNAR*GIFREFVPDRHFGLQRPLDHSVSRSHNRKRNF 669
           R+ AR  +F  F P +++   R    SV  ++NRKRNF
Sbjct: 373 RDEAR-ALFHRFFPKKNYNNSRLRLTSVPSTNNRKRNF 409


>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1441

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 283 SPSAANDSQMIMGPRQNGSCCSDRRPCTN-AMKTLRGLP*TSDSDLHCRCLEELNCQRHV 107
           +P+AA+ S          SCC   +  T+ +  +LRG   T + +  C C   L+   H+
Sbjct: 106 NPAAASSSLQSQRVSYAPSCCRSAKNATSRSAHSLRGKAETCEFEAGCECGRNLDYTDHI 165


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 641 PEATIERETFHNDEGVPLGTVDMMRAK 721
           P+A I R  F    G P+GTV  MR +
Sbjct: 846 PQAGIPRSQFRGARGSPIGTVQGMRGR 872


>SB_4860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 167 SREPSQS-FHRVCTGSPVRAATSILSWPHYHLAVISSTRR 283
           +++P+++ FHRVCT +  R A+S    P++ +  +++  R
Sbjct: 13  AKQPARATFHRVCTETTRREASSEKGKPYHPVCAVTNPAR 52


>SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 271 QHSEKEETRSRKRNYSK--FSIYLPKHVNAKGITKLRIVWP 387
           +H++ E  + RK+   K   S++LPK  +   ITK  IV P
Sbjct: 149 EHAKDEADKQRKKEARKGVHSMWLPKRKDTLPITKATIVQP 189


>SB_25000| Best HMM Match : 7tm_1 (HMM E-Value=1.49995e-41)
          Length = 361

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -2

Query: 586 PERFLILRYFSLLNRIFVVC*MFLYWARTIC 494
           PE   I+ Y+++LN+IFV+C ++L +  + C
Sbjct: 285 PEPQGIVEYYTVLNKIFVLC-LWLVFFNSAC 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,413,711
Number of Sequences: 59808
Number of extensions: 551639
Number of successful extensions: 1617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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