Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0692
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24805.1 68417.m03553 expressed protein                             32   0.45 
At3g54310.1 68416.m06002 hypothetical protein predicted protein,...    29   3.1  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    29   4.1  
At2g36330.1 68415.m04459 integral membrane protein, putative con...    28   5.5  
At4g12650.1 68417.m01990 endomembrane protein 70, putative TM4 f...    28   7.2  
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam...    28   7.2  
At2g35605.1 68415.m04363 SWIB complex BAF60b domain-containing p...    27   9.6  

>At4g24805.1 68417.m03553 expressed protein
          Length = 247

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +1

Query: 235 FVVAPLSSGCH*QHSEKEETRSRKRNYSKFSIYLPKHVNAKGITKLRIVWPRRE 396
           F+  PLSS         E  R R   YS +  Y+   +N     KLR VW  R+
Sbjct: 32  FLRRPLSSSSSVTSVADEGIRIRHHGYSSYEAYIKHQLNKTQNPKLRKVWTTRD 85


>At3g54310.1 68416.m06002 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 358

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 160 DSDLHCRCLEELNCQRHVNL 101
           D  + C+C+ ELN  RH+NL
Sbjct: 195 DVTISCKCMAELNALRHLNL 214


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
            similar to SP|O35134 DNA-directed RNA polymerase I
            largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
            subunit) (RPA194) {Mus musculus}; contains InterPro
            accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 536  ENPIEKREITQDEESFGNSFLIDTLDYSGLW 628
            +NP E+REI+ DE+    +     +D+  LW
Sbjct: 1507 DNPKERREISNDEKKASPALHASGVDFPALW 1537


>At2g36330.1 68415.m04459 integral membrane protein, putative
           contains 4 transmembrane domains; contains Pfam PF04535
           : Domain of unknown function (DUF588);  similar to
           putative ethylene responsive element binding protein
           (GI:22135858) [Arabidopsis thaliana]
          Length = 431

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 470 VCSHSKTTAYSASPIKKHLTDHENPIEKREITQDEESFGN 589
           V   + TT +S+SP   H  DH +  EK +     ES  N
Sbjct: 204 VAFDNSTTHFSSSPSPPHSLDHSSESEKEDAKSKPESRRN 243


>At4g12650.1 68417.m01990 endomembrane protein 70, putative TM4
           family;
          Length = 527

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 537 SWSVRCFFIGLALYAVVLLCEQTWTN 460
           SWS+ CFF G+A   + +L    W++
Sbjct: 299 SWSIACFFPGIAFVILTVLNFLLWSS 324


>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 854

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +1

Query: 316 SKFSIYLPKHVNAKGITKL--RIVWPRRELTSI 408
           S+F + +PKH+++ GITK+  ++  P++E   +
Sbjct: 115 SRFVLEIPKHLSSTGITKITFKLSKPKKEFDDL 147


>At2g35605.1 68415.m04363 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 109

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 482 SKTTAYSASPIKKHLTDHENPIEKREITQDEE---SFGNSFLIDTLDYSGLWTTAFPEA 649
           S+TTA         L + +NP+ KREI  DE+    F     +  L+ S L +  FP++
Sbjct: 50  SRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,043,134
Number of Sequences: 28952
Number of extensions: 383032
Number of successful extensions: 1143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)