Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0690
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 32 0.082
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.3
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 27 3.1
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 26 4.1
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 26 4.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.4
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 26 5.4
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 7.1
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 25 7.1
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 9.4
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 9.4
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 31.9 bits (69), Expect = 0.082
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3
Query: 443 WPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYLGSRLR-VVCCCISCSRALAS 267
W A+ + T S ++ RATSA S A+ +L LG + + ++C + C + S
Sbjct: 437 WKAQHDNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQKAILCTLVVCEKTSLS 496
Query: 266 VSE 258
V++
Sbjct: 497 VAD 499
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 341 QQLSYLGSRLRVVCCCISCSRA 276
++L Y+GS + VC CISC+ A
Sbjct: 146 RKLVYIGSLIIYVCFCISCALA 167
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 356 TRQTLPGLNPARSYAPIGRATWSP 427
T Q+ P NPA +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 537 RTLCDLSCNQESVGHGLLVIRGGDVVPQGGLLA 439
RTL D + +ES H +L +RGG + P LA
Sbjct: 54 RTLSDYNIQKESTLHLVLRLRGGIIEPSLKALA 86
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 537 RTLCDLSCNQESVGHGLLVIRGGDVVPQGGLLA 439
RTL D + +ES H +L +RGG + P LA
Sbjct: 54 RTLSDYNIQKESTLHLVLRLRGGIIEPSLKALA 86
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 92 QCAQVAIGCSRAAHQTALRGSTKPSPQ-LTTLTPKVRAFVERSAA 223
Q A I C +A+ T + T L T P+VRAF+E S A
Sbjct: 1848 QAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIEFSLA 1892
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 151 PSQSSLVGGAAASNRHLST--LCRLPHVVFGDG 59
PS+++L GG A+ + LST L R PH +G
Sbjct: 307 PSRATLTGGYASGSIGLSTPGLSRAPHYELDNG 339
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 340 WLARTDPADVARVESRT 390
WL TDP+ V+RVE T
Sbjct: 419 WLQNTDPSTVSRVEVST 435
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 320 CPNTITVGWPGQTRQTLPGLNP 385
C ++ + WPG +RQ L L+P
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSP 315
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 356 TRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI 481
TR+ + L+PA S A IG T+ P+ + + + P +
Sbjct: 202 TRENISSLDPAISAASIGNVTFGQPNIPSTTTDFAGLAAPNM 243
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 380 NPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITR 487
NP + P+ +P P PP TTSP I R
Sbjct: 228 NPVTT-PPVNNTLLTPPAPPVELPPVTTTSPNAIIR 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,751
Number of Sequences: 5004
Number of extensions: 57097
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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