Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0690
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 87 2e-17
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 71 1e-12
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 62 4e-10
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) 31 0.81
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 31 0.81
SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032) 30 1.9
SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6) 29 2.5
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) 29 4.3
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 29 4.3
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) 28 5.7
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) 28 5.7
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_5935| Best HMM Match : PvlArgDC (HMM E-Value=2.6) 28 5.7
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 28 7.5
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2) 27 9.9
SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 27 9.9
SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05) 27 9.9
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 27 9.9
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 86.6 bits (205), Expect = 2e-17
Identities = 36/47 (76%), Positives = 43/47 (91%)
Frame = +3
Query: 507 PGCMRGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVFSMRVMTRIG 647
PGCM GRTMYV+PFSMGPVGSP+SKIG+++TDS YVV MR+MTR+G
Sbjct: 123 PGCMTGRTMYVLPFSMGPVGSPISKIGIQLTDSEYVVCCMRIMTRMG 169
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 GSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDPADVARVESRTFICSDRESDVVPSAR 435
GS+ E +A L K++NC+ TDP DVARVESRTFIC+ + D VP +
Sbjct: 39 GSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDPQDVARVESRTFICTKCKDDAVPHFK 98
Query: 436 AGQKSALGNYISPPD-YEKAVSDRF 507
G+ L ++S + ++K +R+
Sbjct: 99 -GKVGKLARWMSLEEAHKKLYEERY 122
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 182 LTPKVRAFVERSAALCQPEHVHVC 253
L KV+ FVE +A L P +H+C
Sbjct: 14 LPKKVQEFVEENAKLMTPAQIHIC 37
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/39 (76%), Positives = 36/39 (92%)
Frame = +3
Query: 531 MYVIPFSMGPVGSPLSKIGVEITDSPYVVFSMRVMTRIG 647
MYV+PFSMGPVGSP+SKIG+E+TDS YVV MR+MTR+G
Sbjct: 1 MYVMPFSMGPVGSPISKIGIELTDSEYVVCCMRIMTRMG 39
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Frame = +1
Query: 316 RLPKYDNCWLARTDPADVARVESRTFICSDRESDVVPSARAGQKSA---LGNYISPPDYE 486
+L K +N ++ RTDP DVARVES+TFIC++ E D VP + G+ LG ++S
Sbjct: 200 KLTKRENSYVVRTDPGDVARVESKTFICTENERDAVPDFKKGKDGVVGQLGRWLSVEKAN 259
Query: 487 KAVSDRF 507
+A+ +RF
Sbjct: 260 QALGERF 266
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/33 (66%), Positives = 30/33 (90%)
Frame = +3
Query: 549 SMGPVGSPLSKIGVEITDSPYVVFSMRVMTRIG 647
+MGPVGSP++KIG+++TDS YVV MR+MTR+G
Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYVVCCMRIMTRMG 353
Score = 31.9 bits (69), Expect = 0.46
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 179 TLTPKVRAFVERSAALCQPEHVHVC 253
+L KV+ FV + LCQP+ +H+C
Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHIC 178
>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
Length = 668
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 477 RGGDVVPQGGLLAGASRGDHVALPIG 400
R GDV+P GG + RGD V + IG
Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLIG 551
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 31.1 bits (67), Expect = 0.81
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 383 PARSYAPIG-RATWSP-RLAPARSPPWGTTSPPRITRRPCPTDSWLHERSHNVRDTVLDG 556
P S A +G R T P R AP+ SP T +PP +T T E +H ++ ++LD
Sbjct: 797 PLSSRASVGSRDTAMPVRSAPSPSPITTTVAPPALTGSLGSTSQ--DETAHYIKQSLLDA 854
Query: 557 PCGISSLEDW 586
IS L W
Sbjct: 855 KV-ISHLAPW 863
>SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Frame = +3
Query: 432 SRRPEVR---PGEL-HLPP--GLREGRVRQIPGCMRGRTMYVIPFSMGPVGSPLSKIGVE 593
S +P +R P +L +LP G+ EG + R R M +I FS+GPVGS L IG +
Sbjct: 53 SNKPPIRLKQPSQLVNLPTHRGMSEGETK----ATRMRNM-LIEFSLGPVGSTLGAIGPQ 107
Query: 594 I 596
+
Sbjct: 108 V 108
>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
Length = 227
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 396 YERAGFNPGNVCRVCPGQPTVIVFGQ 319
Y ++ FNP N CRVC + V GQ
Sbjct: 32 YAKSLFNPNNFCRVCNANTSKRVLGQ 57
>SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)
Length = 302
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = -2
Query: 522 LSCNQESVGHGLLVIRGGDVVPQGGLLAGASRGDHVALPIGAYERAGFNPGN 367
L N VG LL++ GG VV A A H ALP R +PGN
Sbjct: 152 LIVNNVVVGVVLLIVNGGVVVGVECTGASAVHESHAALPALPSHRQHTSPGN 203
>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
Length = 1532
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 114 DAAAPPTKLLCEGRRSLPHS*PLSL---QRFA 200
D P T+LL +GRR PHS P S QRFA
Sbjct: 1350 DPHRPTTRLLPQGRRWRPHSRPSSAFRRQRFA 1381
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 341 GWPGQTRQTLPGLNPARSYAP-IGRATWSPRLAPARS 448
G PGQ R+++ + P R AP I R T SPR P R+
Sbjct: 41 GTPGQRRKSV-AVTPPRLSAPHIQRGTASPRSVPPRT 76
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 371 PGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTDSWLHERSHN 532
P P + AP+ + +P A P T PP+ T + D W +++N
Sbjct: 624 PATEPQATVAPLAQTVTAPAQTEA---PTHTAGPPQTTEQATTNDYWQTTQAYN 674
>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
Length = 373
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 341 GWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARS 448
G PGQ R+++ P S I R T SPR P R+
Sbjct: 41 GTPGQRRKSVAVTPPRLSTPHIQRGTASPRSVPPRT 76
>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
Length = 287
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 390 RAGFNPGNVCRVCPGQPTVIVFGQ 319
++ FNP N CR+C + V GQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 371 PGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 493
P P + P R P P+R+ P TT PPR T P
Sbjct: 1105 PRTTPEPTTEP-SRTKPEPTTEPSRTKPEPTTEPPRTTSEP 1144
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +2
Query: 323 PNTITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 493
PN T P T + P P + P + T P P+R+ P TT P R T P
Sbjct: 349 PNVHTTDAPKHTTEP-PRTTPEPTTEP-PQTTPEPTTEPSRTKPELTTEPSRTTVEP 403
>SB_5935| Best HMM Match : PvlArgDC (HMM E-Value=2.6)
Length = 363
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 147 EGRRSLPHS*PLSLQRFARSWSAALLCASRSTCTCARLRDRGEGPA-TADAAADHPQTTA 323
E RS PLS ++F R W + LC + + A + P TA A+A P T A
Sbjct: 162 ERDRSTRDREPLSREQFDRWWGSVHLCGDPAGRSSANKIPAQDKPVNTAKASASDPVTVA 221
>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 419 WSPRLAPARSPPWGTTSPPRITRRPCPTDS 508
W PRL P P +P I R C T S
Sbjct: 146 WEPRLYPLAQPDLNYAAPEFILSRTCDTSS 175
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 365 TLPGLNP-ARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCP 499
T+P + P + +Y P G AT+ + ++P T PP + P P
Sbjct: 254 TIPSVPPGSETYVPPGSATYESMDSVNKAPVPPMTPPPAVVTAPPP 299
>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
Length = 454
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Frame = +2
Query: 347 PGQTRQTLPGLNPARSYAPIGRATW--SPRLAPARSPPWGTTSPPRITRRPCPTDSWLHE 520
PG L P+ Y P+G W SP P + PW P RP T W+
Sbjct: 126 PGYRPMGTVALVPSSCYRPLGTVPWVPSPWYRPLVTVPW----VPSPGYRPLGTVPWVPS 181
Query: 521 RSHNVRDTV 547
+ TV
Sbjct: 182 PGYRPLGTV 190
>SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 434 RAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYLGSRLRVVCCCISCSRA 276
+ E S+ R + V + T A ++ N +LS GS+L CI+ A
Sbjct: 739 KTEWAVSMFRGRNAVVLTPRKTTFATTIAKNPRLSVKGSKLYTTYLCITSGEA 791
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 189 QRFARSWSAALLCASRSTCTCARLRDRGEGPATADAAADHP 311
Q FA +L S TC AR+RD+G + + AD P
Sbjct: 398 QGFATKVRNLVLIKSLQTCLLARIRDKGAKFSISQKFADMP 438
>SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)
Length = 626
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 431 LAPARSPPWGTTSPPRITRRPCPTDSWLHERSHNVRDTVLDGPCGISSLED 583
+AP + P GTT R+ P P D E +RD V P ++++ D
Sbjct: 216 VAPICARPAGTTQ--RVRGTPSPADFETAETQARLRDAVSGPPTDLATVSD 264
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 365 TLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTDSWLHERSHNVR 538
T P +NPA + + A P +AP + P GT P IT P + ++S R
Sbjct: 593 TEPSVNPAITEQSVNPAITEPSVAPTITEPSGT---PIITEPSAPANKSNAQKSKGKR 647
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 537 RTLCDLSCNQESVGHGLLVIRGGDVVPQGGLLA 439
RTL D + +ES H +L +RGG + P +LA
Sbjct: 20 RTLSDYNIQKESTLHLVLRLRGGVIEPSLRILA 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,692,952
Number of Sequences: 59808
Number of extensions: 517684
Number of successful extensions: 1925
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1922
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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