Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0690
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g38560.1 68418.m04662 protein kinase family protein contains ... 31 0.87
At5g24316.1 68418.m02864 proline-rich family protein contains pr... 30 1.2
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident... 29 2.0
At1g44880.1 68414.m05142 Ulp1 protease family protein similar to... 29 2.0
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 3.5
At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.5
At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.5
At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.5
At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.5
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 28 4.7
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 28 4.7
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 28 4.7
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 28 4.7
At1g55550.1 68414.m06358 kinesin motor protein-related Similar t... 28 4.7
At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containi... 28 6.1
At3g22270.1 68416.m02815 expressed protein 28 6.1
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 28 6.1
At4g12070.1 68417.m01919 expressed protein 27 8.1
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 27 8.1
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 27 8.1
At1g67470.1 68414.m07683 protein kinase family protein contains ... 27 8.1
At1g66330.2 68414.m07533 senescence-associated family protein si... 27 8.1
At1g66330.1 68414.m07532 senescence-associated family protein si... 27 8.1
At1g20990.1 68414.m02627 DC1 domain-containing protein contains ... 27 8.1
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 30.7 bits (66), Expect = 0.87
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +2
Query: 323 PNTITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 493
P+T P + P P S +P T +P P+ SPP T SPP T P
Sbjct: 99 PSTPATTPPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSP 155
>At5g24316.1 68418.m02864 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 125
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 419 WSPRLAPARSPPWGTTSPPRITRRP 493
WSPR P R P+ PP TRRP
Sbjct: 95 WSPRPIPKRPMPYVPPPPPPPTRRP 119
>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
identical to cyclase-associated protein (cap1)
GI:3169136 from [Arabidopsis thaliana]
Length = 476
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 368 LPGLNP-ARSYAPIG---RATWSPRLAPARSPPWGTTSPP 475
LPGL +S+ P+G A+ P APA+ PP PP
Sbjct: 202 LPGLREYVKSHYPLGPVWNASGKPASAPAKGPPGAPAPPP 241
>At1g44880.1 68414.m05142 Ulp1 protease family protein similar to
At5g28170, At1g35110, At3g42530, At4g19320, At5g36020,
At4g03970, At3g43010, At2g10350; contains Pfam profile
PF02902: Ulp1 protease family, C-terminal catalytic
domain
Length = 1038
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 452 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYL 324
+D PAR G +LS +EHM V S + + NQ+ +++
Sbjct: 842 SDSSPARERGKPTLSEAEHMEVLVSLLSQKLATTLTNQRAAFV 884
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 347 PGQTRQTLPGLNPAR--SYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTDS 508
P + P +PA S++P + SP AP+ SP + P + P P+ S
Sbjct: 229 PSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSS 284
>At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 368 LPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI---TRRPCPTDSWLHERSHNV 535
LP S + + SPR +P+ S P SPPRI T+ PC ++H S N+
Sbjct: 130 LPSSTTTSSSSTTSSTSSSPR-SPSLSKPPLPPSPPRITTVTKNPC-YGCYVHRNSRNI 186
>At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 218
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 368 LPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI---TRRPCPTDSWLHERSHNV 535
LP S + + SPR +P+ S P SPPRI T+ PC ++H S N+
Sbjct: 152 LPSSTTTSSSSTTSSTSSSPR-SPSLSKPPLPPSPPRITTVTKNPC-YGCYVHRNSRNI 208
>At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 368 LPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI---TRRPCPTDSWLHERSHNV 535
LP S + + SPR +P+ S P SPPRI T+ PC ++H S N+
Sbjct: 130 LPSSTTTSSSSTTSSTSSSPR-SPSLSKPPLPPSPPRITTVTKNPC-YGCYVHRNSRNI 186
>At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 368 LPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI---TRRPCPTDSWLHERSHNV 535
LP S + + SPR +P+ S P SPPRI T+ PC ++H S N+
Sbjct: 130 LPSSTTTSSSSTTSSTSSSPR-SPSLSKPPLPPSPPRITTVTKNPC-YGCYVHRNSRNI 186
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +2
Query: 332 ITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRL-----APARSPPWGTTSPPRITRRPC 496
+ G GQ+ + P +P AP T SP + APA++P +SP + P
Sbjct: 15 VVAGVGGQSPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPA 74
Query: 497 P 499
P
Sbjct: 75 P 75
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 371 ATSAGSV-RANQQLSYLGSRLRVVCCCISCSRALASVSEPRTRARAPAGTEQRCAPRTR 198
A AG R+ + S+ G + VV S R + RTR+R P+G+ R R+R
Sbjct: 98 AYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSR 156
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 350 GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 505
G T Q P P + AP T P P +PP TTSPP +T P P +
Sbjct: 17 GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 350 GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 505
G T Q P P + AP T P P +PP TTSPP +T P P +
Sbjct: 17 GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69
>At1g55550.1 68414.m06358 kinesin motor protein-related Similar to
Kinesin proteins; Contains kinesin motor domain protein
motif and kinesin heavy chain signature motif
Length = 887
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 49 RIIGHPRRLREEDGTMCSSGDWMQPRRPPNCSARVDEAFPT-ADHSHSKGSRVRGAQRCS 225
++ G P + EE+ + + P++P N S R + FP+ + S R+ GA
Sbjct: 459 KLTGKPHVIEEEEKDVVREVIHVTPKKPRNKSRRASDVFPSFMRPTASSNRRLSGADFSV 518
Query: 226 VPAGARARVR 255
P + + R
Sbjct: 519 TPNSSSFKSR 528
>At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 763
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -3
Query: 437 ARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYLGSRLRVVCCCIS 288
++ TTS++ S ++R ++ A + + N QL Y G + V C++
Sbjct: 35 SQRNATTSINHSISESLRRNSPARALSIFKENLQLGYFGRHMDEVTLCLA 84
>At3g22270.1 68416.m02815 expressed protein
Length = 782
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 423 PLGSRRPEVRPGELHLPPGLREGR--VRQIPGCMRGRTMYVIPFSMGP 560
P G+R P+ PG LH P L G P + ++ S GP
Sbjct: 187 PPGNRSPQASPGNLHRAPSLPGGSQLTYSAPSPLSNSGFHLSGLSQGP 234
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 151 VDEAFPTADHSHSKGSRVRGAQRCSVPA 234
VD+ P + +K SR R +RC+VP+
Sbjct: 309 VDDCLPARKKAKTKSSRPRPRRRCTVPS 336
>At4g12070.1 68417.m01919 expressed protein
Length = 483
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 367 VARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDR 504
V RV + SD + +VP+ AG++ + I P+Y SDR
Sbjct: 86 VVRVRRGSDDFSDLSACIVPNESAGKRQYMLRSIDDPNYTVGFSDR 131
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 537 RTLCDLSCNQESVGHGLLVIRGGDVVPQGGLLA 439
RTL D + +ES H +L +RGG + P +LA
Sbjct: 54 RTLADYNIQKESTLHLVLRLRGGIIEPSLMMLA 86
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 537 RTLCDLSCNQESVGHGLLVIRGGDVVPQGGLLA 439
RTL D + +ES H +L +RGG + P +LA
Sbjct: 54 RTLADYNIQKESTLHLVLRLRGGIIEPSLMMLA 86
>At1g67470.1 68414.m07683 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 389
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 476 RITRRPCPTDSWLHERSHNVRDTVLDGPCGISSLEDWCRNHGFALRGFFYASH 634
RI RRP PT ++ E D + D G S E+ C+ F L H
Sbjct: 253 RIMRRPFPTSKFMEEPK---MDEIADPEMGEISEEELCQMKAFLLLSLRCTGH 302
>At1g66330.2 68414.m07533 senescence-associated family protein
similar to senescence-associated protein (GI:12836895)
[Ipomoea batatas]
Length = 417
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -1
Query: 214 ALHERANLWSESGQLWGRLRRPSQSSLVGGAAASNRHLSTLCRLPHVVFGDGL*YAMVFN 35
AL ++W+ G L+R ++ S AAA++R ++ L + V GD L + M F
Sbjct: 343 ALAAAPSMWTLGNAGMGALQRLAEDSNPAIAAAASRAINALKKQWEVEEGDSLRFMMNFE 402
Query: 34 LYN 26
N
Sbjct: 403 RPN 405
>At1g66330.1 68414.m07532 senescence-associated family protein
similar to senescence-associated protein (GI:12836895)
[Ipomoea batatas]
Length = 417
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -1
Query: 214 ALHERANLWSESGQLWGRLRRPSQSSLVGGAAASNRHLSTLCRLPHVVFGDGL*YAMVFN 35
AL ++W+ G L+R ++ S AAA++R ++ L + V GD L + M F
Sbjct: 343 ALAAAPSMWTLGNAGMGALQRLAEDSNPAIAAAASRAINALKKQWEVEEGDSLRFMMNFE 402
Query: 34 LYN 26
N
Sbjct: 403 RPN 405
>At1g20990.1 68414.m02627 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain; contains weak hit to Pfam
PF00569: Zinc finger, ZZ type
Length = 319
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/68 (30%), Positives = 27/68 (39%)
Frame = -1
Query: 268 LSRSRAHVHVLRLAQSSAALHERANLWSESGQLWGRLRRPSQSSLVGGAAASNRHLSTLC 89
LS S H H LRL SS+A G L G +R ++ V + HL +C
Sbjct: 180 LSSSSLHHHPLRLLPSSSAGSTTGG--DSGGFLCGECKRGKRTGRVYRCTVCDYHLHAVC 237
Query: 88 RLPHVVFG 65
V G
Sbjct: 238 AKDAAVNG 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,391,264
Number of Sequences: 28952
Number of extensions: 345532
Number of successful extensions: 1291
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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