Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0689
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   6.1  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    26   6.1  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    26   6.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   6.1  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   8.1  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 270  EHLNIPDNIQLADPTFDVSSDIDL 341
            +HL++P++++L +   DVS D DL
Sbjct: 4082 DHLDLPEDLKLDEKEGDVSKDSDL 4105


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -3

Query: 384 YPVPKDPKIYQHRVINLCLMIHRKWDLLVVYYRGYLNVRVKCLYRQT*GYLR 229
           Y + K+   ++   +N C++  + W+ L   Y G L+  +    R    +LR
Sbjct: 60  YLLEKELARFKSARLNFCIVFFKNWEALYSQYDGILHASLLLFRRVAIRHLR 111


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 13  NRYHVARALLDNGSQHSLISEKLAKRL--NTNFTQSTVRI 126
           NR+HV    +D    +SLI +K + +L   T+FT   V +
Sbjct: 248 NRFHVISKRIDIAELNSLIHDKSSNKLYMKTSFTTYEVAV 287


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 441 SGPICSNHSNINEVQCNFSHSLDYN 515
           S  IC +  N N ++ NF HSL ++
Sbjct: 125 SEDICQSEENANMLKLNFYHSLGFD 149


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 393  LPSGPFLLNTKLGWVVSGPICSNHSNINEVQCNFSHSLDYNFVSFGK 533
            LP     ++T   W+  G +   HS ++     F  SLDYNF S G+
Sbjct: 1362 LPEIRLNVHTDDFWIHGGDLTQLHSILSF----FGFSLDYNFYSSGR 1404


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 657  LLNRSPLENLPSFSRFVVSINNFSHLFSSCVKIFFDTDKSSISQNLR 517
            ++N  P+E+LP  SR +   N   +   +  K+   T++S + +N R
Sbjct: 1143 MVNNEPVESLPRHSR-IKFANKEIYRSGTIRKVHIQTNESELERNER 1188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,198
Number of Sequences: 5004
Number of extensions: 67461
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)