Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0689
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0404 + 9876703-9877314,9877599-9877838,9877951-9878073,987...    29   3.7  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    28   6.4  
02_02_0225 + 8051203-8052618                                           28   8.5  

>02_02_0404 +
           9876703-9877314,9877599-9877838,9877951-9878073,
           9878195-9878374
          Length = 384

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 357 IFWDLLEQGRIRLPSGPFLLNTKLG 431
           IFWDL + G +R   GP LL ++ G
Sbjct: 241 IFWDLSKHGIMRPKMGPLLLKSQTG 265


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 270  EHLNIPDNIQLADPTF--DVSSDIDLLLGADIFWDL 371
            E  +I   I +  PTF  DVS  + LLL  D+FW++
Sbjct: 963  EQASISHKICMRTPTFHCDVSWTVFLLLLPDVFWEI 998


>02_02_0225 + 8051203-8052618
          Length = 471

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 270 EHLNIPDNIQLA-DPTFDVSSDIDLLLGAD--IFWDLLEQGRIRLPSGPFLLNT 422
           E+ ++PD ++LA D T  V+   D  L     +FW LLE+ R    +  FL+N+
Sbjct: 140 EYRDLPDPLRLAGDVTIRVADMPDGYLDRSNPVFWQLLEEVRRYRRADGFLVNS 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,670,719
Number of Sequences: 37544
Number of extensions: 360678
Number of successful extensions: 808
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)