Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0689
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical pr...    35   0.066
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    33   0.27 
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    30   1.4  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    29   4.4  
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   7.6  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   7.6  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   7.6  

>U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical
           protein C50E3.7 protein.
          Length = 323

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 612 FVVSINNFSHLFSSCVKIFFDTDKSSISQNLRSCNLTND 496
           FVVS+  F H+ + C+ I+    +SS+S+ L  C+L  D
Sbjct: 123 FVVSLRVFLHILTICIIIYVSNTESSVSKFLSQCSLYVD 161


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 515 LRKFWEIEDLSVSKNILTQDENKCEKLFIDTTKREKE 625
           L KFW +E   + +N  T+D+   ++LF  TT R+ +
Sbjct: 747 LEKFWSLESCFIFENPKTKDDELTDELFKSTTTRDPD 783


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +3

Query: 228 TSNNLKFAYTNISLEHLNIPDNIQLADPTFDVSSDIDLLLGADIFWDLLEQGRIRLPSGP 407
           T+ +LKFA T            +++    F+   + D+++G D   ++     I+LPSG 
Sbjct: 2   TNEDLKFALTK----------QLKINQECFETRVEPDIIIGCDHIAEIWRGDFIQLPSGI 51

Query: 408 FLLNTKLGWVVSG 446
            L+ T  G+   G
Sbjct: 52  LLIKTVFGYTTMG 64


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/72 (22%), Positives = 30/72 (41%)
 Frame = -2

Query: 475 FIFEWLEQIGPETTQPNFVFNKNGPEGKRILPCSKRSQNISAPSNKSMSDDTSKVGSASC 296
           F+F + +  G +  Q N V N N  +   +L    +   ++ P     S++    GS   
Sbjct: 255 FVFNFNKNQGGQNNQNNHVNNNNHNQNIPVLESKPKVATLAIPGASCKSNEICVGGSICT 314

Query: 295 ILSGIFKCSSEM 260
           +  GI  C  ++
Sbjct: 315 LPIGICLCPGDL 326


>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 79   LAKRLNTNFTQSTVRIAGVGQHLTHTNKSCVISMRSKTSNFN 204
            L KR+  N+  +++R+A  G  L   N+S +  MRS+    N
Sbjct: 1275 LFKRVFGNYVHASMRLASSGSGLLRENRSELREMRSEEKRSN 1316


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 79   LAKRLNTNFTQSTVRIAGVGQHLTHTNKSCVISMRSKTSNFN 204
            L KR+  N+  +++R+A  G  L   N+S +  MRS+    N
Sbjct: 1275 LFKRVFGNYVHASMRLASSGSGLLRENRSELREMRSEEKRSN 1316


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 79   LAKRLNTNFTQSTVRIAGVGQHLTHTNKSCVISMRSKTSNFN 204
            L KR+  N+  +++R+A  G  L   N+S +  MRS+    N
Sbjct: 1275 LFKRVFGNYVHASMRLASSGSGLLRENRSELREMRSEEKRSN 1316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,538,932
Number of Sequences: 27780
Number of extensions: 368514
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)