Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0689
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 417 NTKLGWVVSGPICSNHSNINEVQCNFSHSLDYNFVSFGK*KIYLCQRI 560
           N  L  VVS PI    +  + V C  SHS     V+ G   I LC+++
Sbjct: 203 NVPLQPVVSDPIFDKKAMSDLVICKLSHS--NASVAGGMEMILLCEKV 248


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 417 NTKLGWVVSGPICSNHSNINEVQCNFSHSLDYNFVSFGK*KIYLCQRI 560
           N  L  VVS PI    +  + V C  SHS     V+ G   I LC+++
Sbjct: 203 NVPLQPVVSDPIFDKKAMSDLVICKLSHS--NASVAGGMEMILLCEKV 248


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 86  ND*IRILHSPLFE*QVWVNISHIRINHVLF 175
           ND I   HS     + WVN S IR N+ LF
Sbjct: 259 NDRILYFHSLASRVESWVNTSVIR-NYTLF 287


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
 Frame = -3

Query: 192 CFRTHR-----NNT*FIRMCEMLTHTCYSNSGLCKIRI 94
           C R HR     N   +   CE+    C+S S L K R+
Sbjct: 110 CPRRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRL 147


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 387 SYPVPKDPKIYQHRVINLCLMIHRKWDLL 301
           S+PV K+  +    V+   +M+H + D L
Sbjct: 104 SWPVKKEAVVEGDLVLGGLMMVHERQDRL 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,472
Number of Sequences: 438
Number of extensions: 4342
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)