Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0689
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,...    32   0.33 
At2g02970.1 68415.m00249 nucleoside phosphatase family protein /...    29   3.1  
At5g63710.1 68418.m07997 leucine-rich repeat transmembrane prote...    29   4.0  
At4g14760.1 68417.m02271 M protein repeat-containing protein con...    27   9.3  
At3g63250.2 68416.m07106 homocysteine S-methyltransferase 2 (HMT...    27   9.3  
At3g63250.1 68416.m07107 homocysteine S-methyltransferase 2 (HMT...    27   9.3  
At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related c...    27   9.3  

>At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase SP:P45582 from
           [Asparagus officinalis]
          Length = 815

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 19  YHVARALLDNGSQHSLISEKLAKRLNTNFTQSTVRIAGVGQHLTHTNKSCVISMRSKTSN 198
           YH+ R+ L   S   +I E+  +      T  TV +  V  H+++TN   VIS R K  N
Sbjct: 662 YHIPRSFLKPNSNLLVILEEEREGNPLGITIDTVSVTEVCGHVSNTNPHPVISPRKKGLN 721


>At2g02970.1 68415.m00249 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P55772
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Mus musculus}; contains Pfam
           profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 555

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 382 PCSKRSQNISAPSNK-SMSDDTSKVGSASCILSGIFKCSSEMFV*ANLR 239
           P S  +  ++ P++K + S+    VGS S +L  +F C S +F   NLR
Sbjct: 34  PSSSSTYTLTKPNSKHAKSNLLLTVGSISVVLGVLFLCYSILFSGGNLR 82


>At5g63710.1 68418.m07997 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 614

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +1

Query: 28  ARALLDNGSQHSLISEKLAKRLNTNFTQSTVRIAGVGQHLTHTNKSCVISMRSKTSNFNK 207
           A  LLDN  +  L    LAK ++T+ T  T ++ G   H+      C      KT  F  
Sbjct: 420 ANILLDNNFEPVLGDFGLAKLVDTSLTHVTTQVRGTMGHIA-PEYLCTGKSSEKTDVFGY 478

Query: 208 RISCLVL 228
            I+ L L
Sbjct: 479 GITLLEL 485


>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
            Pfam profile: PF02370 M protein repeat
          Length = 1676

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -2

Query: 487  H*TSFIFEWLEQIGPETTQPNFVFNKNGPEGKRILPCSKRSQNISAPSNKSM 332
            H ++ +FE+ ++     T  NF+ N N P+         +S+N S  S+K++
Sbjct: 1447 HGSNDMFEFWDESAESETSVNFLINSNKPQRSLNSNLRHQSRNPSIESDKAV 1498


>At3g63250.2 68416.m07106 homocysteine S-methyltransferase 2 (HMT-2)
           99.7% identical to homocysteine S-methyltransferase
           AtHMT-2 (GI:6685163) [Arabidopsis thaliana]
          Length = 293

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 351 ADIFWDLLEQGRIRLPSGPFLLNTKLGW-VVSG 446
           A  F DLLE+G +++P G F  N+K G  VVSG
Sbjct: 151 AQAFADLLEEGDVKIP-GWFSFNSKDGVNVVSG 182


>At3g63250.1 68416.m07107 homocysteine S-methyltransferase 2 (HMT-2)
           99.7% identical to homocysteine S-methyltransferase
           AtHMT-2 (GI:6685163) [Arabidopsis thaliana]
          Length = 333

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 351 ADIFWDLLEQGRIRLPSGPFLLNTKLGW-VVSG 446
           A  F DLLE+G +++P G F  N+K G  VVSG
Sbjct: 191 AQAFADLLEEGDVKIP-GWFSFNSKDGVNVVSG 222


>At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related
           contains weak similarity to BR1 [Chironomus tentans]
           gi|7042|emb|CAA45607
          Length = 468

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 381 GRIRLPSGPFLLNTKLGWVVSGPICSNHSNINEVQCNFSHSLDYN 515
           G  R  SGP  +    G + SGPI S   N +      S  LDY+
Sbjct: 125 GVTRQNSGPIPILPTTGLITSGPITSGPLNSSGAPRKISGPLDYS 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,102
Number of Sequences: 28952
Number of extensions: 322930
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)