Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0688
         (631 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    26   0.30 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    26   0.30 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.1  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   6.4  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 74  ENMVRSLSQWTKTLSFPARLSPNRTSKESVGNGQPGSPG 190
           E+ + ++SQ T +   P R SP+     S  + + GSPG
Sbjct: 46  ESHLNAISQITNSTLDPGRKSPSSPRISSPSSTKSGSPG 84


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +2

Query: 134 SPNRTSKESVGNG-QPG--SPGVSPTPSA--SSLPQGSEKTISPIPSRRSV 271
           SP   +  +VG G  P   SP  +P+PS+  SSLP     T +P  S RSV
Sbjct: 51  SPPPLADAAVGKGFHPWKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSRSV 101



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 208 AWRGRHSRGAWLTIADAL 155
           AW   HS G+WL ++  +
Sbjct: 188 AWWDVHSTGSWLDMSGGM 205


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 434 PQCAAHSTASCLQVFRCAFSLRSSSDH 354
           P+         LQ +RC FSLR    H
Sbjct: 266 PEAEKRKLIHLLQEYRCIFSLRPGLTH 292


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 92  LSQWTKTLSFPARLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSE 235
           L  +   ++  + LSP   S   + NG+    G +P+ +  +L + SE
Sbjct: 286 LPYFAAAVAAASNLSPKTNSSPDLWNGKLKHGGPTPSDATKALEKMSE 333


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 347 DVSGQTSSAN*RHI*ILASTTR 412
           DVSGQ    N ++  +L +TTR
Sbjct: 110 DVSGQDEEKNIKYRNLLETTTR 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,177
Number of Sequences: 336
Number of extensions: 3373
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)