Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0688
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34575| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-15) 74 1e-13
SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24) 50 1e-06
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39) 42 4e-04
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 37 0.012
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 37 0.012
SB_44933| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-25) 36 0.036
SB_21259| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-07) 33 0.14
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 32 0.33
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 31 0.77
SB_11289| Best HMM Match : zf-TRAF (HMM E-Value=1.7e-08) 31 0.77
SB_59248| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-12) 31 1.0
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 31 1.0
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_36802| Best HMM Match : Pkinase (HMM E-Value=2.2e-23) 30 1.8
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 29 2.4
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09) 29 2.4
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 29 3.1
SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10) 29 3.1
SB_52207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0) 29 4.1
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_18566| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_53480| Best HMM Match : Sigma70_r1_1 (HMM E-Value=5.7) 28 5.4
SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 28 5.4
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 5.4
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.2
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017) 28 7.2
SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023) 28 7.2
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065) 27 9.5
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 27 9.5
SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2) 27 9.5
SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043) 27 9.5
SB_29001| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05) 27 9.5
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 27 9.5
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05) 27 9.5
>SB_34575| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-15)
Length = 262
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/85 (38%), Positives = 48/85 (56%)
Frame = +1
Query: 250 NTITEISQIIYPDPESEKAIMGSVVYCIHHKEGCQWSDELRKLKAHLNTCKHDAVLCAAH 429
NT + SQ+ Y D + + IM V C +++ GC+W +LRKL+ HL CK + C+
Sbjct: 11 NTAIDYSQV-YADDVTNQMIMSLTVICDYYQAGCKWKGQLRKLQGHLAECKFVSADCSNS 69
Query: 430 CGAMIPRVLMQDHLRYTCPRRRANC 504
CGA I + M +H CP+RR C
Sbjct: 70 CGARIQKRRMSEHTSKDCPKRRVCC 94
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 537 LEEHQGNCGHEPIYC*NKCGAKVQRRHTQQH 629
L+ H C C N CGA++Q+R +H
Sbjct: 52 LQGHLAECKFVSADCSNSCGARIQKRRMSEH 82
>SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 277 IYPDPESEKAIMGSVVYCIHHKEGCQWSDELRKLKAHLNTCKHDAVLCAAHCGAM----- 441
+YPD ++ ++ V C +H C+W EL L H+ CK + C +CG
Sbjct: 80 VYPDKACKRTVLSLTVKCPNHVTDCEWVGELGNLPVHIEACKRVPIKCVNNCGRTDIARE 139
Query: 442 -IPRVLMQDHLR 474
+ R+ M+ HL+
Sbjct: 140 EVKRIEMEKHLQ 151
>SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24)
Length = 567
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +1
Query: 280 YPDPESEKAIMGSVVYCIHHKEGCQWSDELRKLKAHLNTCKHDAVLCA-AHCGAMIPRVL 456
+ D +++ I+ V+C++ GC W ELR + H C+ + + C CG +
Sbjct: 74 FRDKFADREILELHVHCVNQPHGCPWEGELRHRQNHHTKCEFNPISCVHPECGKKLSVAK 133
Query: 457 MQDHLRYTCPRRRANCEPATPSSRVARSRSTKE 555
+ +HL+ C R C VAR + E
Sbjct: 134 LPEHLQNECQYREETCSYCEQPVVVARMKEHHE 166
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 322 VYCIHHKEGCQWSDELRKLKAHL-NTCKHDAVLCAAHCGAMIPRVLMQDHLRYTCPRRRA 498
+ C+H + G + S + KL HL N C++ C+ +C + M++H TCP
Sbjct: 118 ISCVHPECGKKLS--VAKLPEHLQNECQYREETCS-YCEQPVVVARMKEHHEKTCPSYPV 174
Query: 499 NC 504
NC
Sbjct: 175 NC 176
>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 247 PNTITEISQIIYPDPESEKAIMGSV----VYCIHHKEGCQWSDELRKLKAHLNTCKHDAV 414
P + E+++ I P+ +KA + V C + + C+W + + +H+ C + +
Sbjct: 467 PGCMDELNENI---PDIDKAFHEEIQELDVKCRNVEWNCKWEGCVNEFSSHVEKCDYSDI 523
Query: 415 LCAAHCGAMIPRVLMQDHLRYTCPRRRANC 504
LC CGA R + HL CP + C
Sbjct: 524 LCENDCGAKFQRRFLTKHLDKDCPEKLITC 553
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 510 CHTEFSGSALEEHQGNCGHEPIYC*NKCGAKVQRRHTQQH 629
C E + H C + I C N CGAK QRR +H
Sbjct: 502 CKWEGCVNEFSSHVEKCDYSDILCENDCGAKFQRRFLTKH 541
>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
Length = 684
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 367 LRKLKAHLNTCKHDAVLCAAHCGAMIPRVLMQDHLRYTCPRRRANC 504
+R L HL CK + C+ CGA I + M +H CP+RR C
Sbjct: 134 IRSLVGHLAECKFVSADCSNSCGARIQKRRMSEHTSKDCPKRRVCC 179
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 534 ALEEHQGNCGHEPIYC*NKCGAKVQRRHTQQH 629
+L H C C N CGA++Q+R +H
Sbjct: 136 SLVGHLAECKFVSADCSNSCGARIQKRRMSEH 167
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 406 DAVLCAAHCGAMIPRVLMQDHLRYTCPRRRANCE 507
D+ + CG I R + H+ CPRR C+
Sbjct: 365 DSDIFTCTCGRRISRAEITTHMSDECPRRLTKCQ 398
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 313 GSVVYCIHHKEGCQWSDELRKLKAHLNTCKHDAVLCAAHCGAMIPRVLMQDH 468
G +V+C + GC + +K+HL +C + V C A C + R+ +Q H
Sbjct: 78 GLLVHCENADNGCDIVTRMDNMKSHLESCPYGLVQCKA-CEVKVKRIDLQTH 128
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 313 GSVVYCIHHKEGCQWSDELRKLKAHLNTCKHDAVLCAAHCGAMIPRVLMQDHLRYTC 483
G +V+C + GC+ +L ++ HL +C H V C C A + R + +H TC
Sbjct: 84 GLIVHCPNADNGCKLVLKLEGVEGHLKSCSHAPVQCCG-CSAFLKRGELAEH-HNTC 138
>SB_44933| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-25)
Length = 462
Score = 35.5 bits (78), Expect = 0.036
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 373 KLKAHLNTCKHDAVLCAAHCGAM-IPRVLMQDHLRYTCPRRRANC 504
K + HL C + C CG M IPR M +H+ CP+ +C
Sbjct: 125 KPRHHLEVCSRYPIQCPNMCGKMDIPREQMTNHIIEDCPKATESC 169
>SB_21259| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-07)
Length = 79
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 382 AHLNTCKHDAVLCA-AHCGAMIPRVLMQDHLRYTCPRRRANCEPATPSSRVARSRSTKE 555
AH C + V C+ C A +PR+ + +HL C R CE S + T++
Sbjct: 1 AHARNCDYKLVTCSNPMCSAQLPRMDVDEHLLVECDWRLIVCEYCGDESPYCLQKRTRK 59
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 328 CIHHKEGCQWSDELRKLKAHLNTCKHDAV 414
C H GCQ+ ++++HL TCK +AV
Sbjct: 325 CPHQAYGCQFEGNNEQVRSHLETCKFEAV 353
>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 540 EEHQGNCGHEPIYC*N-KCGAKVQRRHTQQH 629
+EH NC HE ++C N +C + RR Q H
Sbjct: 154 QEHAKNCAHEDVHCTNPECNEVMPRRSLQYH 184
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 277 IYPDPESEKAIMGSVVYCIHHKEGCQWSDELRKLKA 384
++ D + +AI+G V C + K C+W+ EL +++
Sbjct: 59 VFVDKAARRAILGLGVKCWNWKRKCEWTGELSNIES 94
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 379 KAHLNTCKHDAVLCAAHCGAM-IPRVLMQDHLRYTCP 486
K H+ +CK + C CGA IPR M H+ CP
Sbjct: 209 KTHMKSCKRLPIECVNKCGAKDIPREEMPFHMS-ECP 244
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 546 HQGNCGHEPIYC*NKCGAK 602
H +C PI C NKCGAK
Sbjct: 211 HMKSCKRLPIECVNKCGAK 229
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 128 RLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISPI---PSRRSVKSFIPIL 292
RLS +R +++ + GSP VSP PS S + + + PI P R ++ P+L
Sbjct: 1809 RLSASRANRDRGHSSSSGSPPVSPAPSYHSTDAYAMRMVEPIYNQPQRAHDRNGRPVL 1866
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 31.1 bits (67), Expect = 0.77
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 131 LSPNRTSKE-SVGNGQPGSPGVSPTPSASSLPQGSEKTISPIPSRRSVKSFIPILSLRRR 307
+SP + KE + G PGS + + P G+ K S P R S P L RRR
Sbjct: 2264 ISPTKCQKELELARGLPGSLPIVGSFIPDCKPNGAYKRNSATPLRASAAGLSPCLKERRR 2323
>SB_11289| Best HMM Match : zf-TRAF (HMM E-Value=1.7e-08)
Length = 230
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 346 GCQWSDELRKLKAHLNTCKHDAVLCAAHCGAMIPRVLMQDHLRYTCPRRRANC 504
GCQ + + L H+ C C C ++ M++H R CPR + C
Sbjct: 115 GCQTLVQRKNLADHMEACLFAGRRCT-ECNSVQQLQHMEEHRRLGCPRAQRYC 166
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 343 EGCQWSDELRKLKAHLNTCKHDAVLCA-AHCGAMIPRVLMQDHL 471
E C W L + H TC+ V C C ++ R + DH+
Sbjct: 86 EECPWRGRLDLRQGHTETCQEKPVPCRNVGCQTLVQRKNLADHM 129
>SB_59248| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-12)
Length = 359
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 385 HLNTCKHDAVLCAAHCGAMIPRVLMQDHLRYTCPRRRANCE 507
HL C C CGA++ R + H CP R C+
Sbjct: 21 HLKGCPCMDTNCPNECGAVMQRKEVDKHCAEACPNRSVPCD 61
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 543 EHQGNCGHEPIYC*NKCGAKVQRRHTQQH 629
EH C C N+CGA +QR+ +H
Sbjct: 20 EHLKGCPCMDTNCPNECGAVMQRKEVDKH 48
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 131 LSPNRTSKESVGNGQP-GSPGVSPTPSASSLPQGSEKTISPIPSRRSVKSFIP 286
L+ RTS S P G+ S + S + S+K ISP+ +K FIP
Sbjct: 8 LAKRRTSNRSAAKADPQGNQDTSESEKDSFKTKTSQKKISPVFGNARLKCFIP 60
>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 131 LSPNRTSKESVGNGQP-GSPGVSPTPSASSLPQGSEKTISPIPSRRSVKSFIP 286
L+ RTS S P G+ S + S + S+K ISP+ +K FIP
Sbjct: 8 LAKRRTSNRSAAKADPQGNQDTSESEKDSFKTKTSQKKISPVFGNARLKCFIP 60
>SB_36802| Best HMM Match : Pkinase (HMM E-Value=2.2e-23)
Length = 318
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 276 DLTDLRDGIGEIVFSEPWGSEEALGVG 196
DL+ L D G + SEPW S+EAL G
Sbjct: 185 DLSGLLDPKGRYIGSEPWKSKEALNRG 211
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Frame = +2
Query: 140 NRTSK--ESVGNGQPGSPGVSP--TPSAS--SLPQGSEKTISPIPSRRSVK 274
NR+SK G Q +P VSP +PS+S S P+GS T SP SRR K
Sbjct: 242 NRSSKYDSQSGGSQRTTPAVSPYQSPSSSARSSPRGS-PTASPSISRRRAK 291
>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
Length = 310
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +1
Query: 322 VYCIHHKEGCQWSDELRKLKAHL-NTCKHDAVLCA-AHCGAMIPRVLMQDHLRYTCPRRR 495
++C H +GC+ L L HL C AV C C + R + HL C +
Sbjct: 80 IHCDHQSKGCKSVVRLGSLARHLKEECDFVAVACPNTGCNESLNRCDLDTHL-IICDFQT 138
Query: 496 ANC 504
A C
Sbjct: 139 AKC 141
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 98 QWTKTLSFPA-RLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISP 250
Q + +L P+ R +P+ S ++ +G+P PG+ P+P S+P S+ + P
Sbjct: 272 QTSPSLQPPSQRSTPSPQSMSALHSGKPKRPGMPPSP---SVPHQSQPAVPP 320
>SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)
Length = 444
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Frame = +3
Query: 381 GTSKYLQARRGAMCRALRRHDTAGAHA------GPPPLHVPAAPGQLRACHTEFSGSALE 542
G + ++ A RG + D A A+ G PLH A+ G T A
Sbjct: 138 GVALFIAAHRGQEGLIRKLIDDAKANVNMKTPFGRSPLHAAASQGHSSTIDTMLEKGADI 197
Query: 543 EHQGNCGHEPIYC*NKCGAKVQRRH 617
+ + G P+ ++CG K RH
Sbjct: 198 DEEDTQGKTPLMVASQCGFKDSERH 222
>SB_52207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Frame = +2
Query: 74 ENMVRSLSQWTKTLSFPARLSPNRTSKESVGNGQPGSPGVSPTPSASSL---------PQ 226
ENM S + K L P + + K +V +P P+ SSL +
Sbjct: 151 ENMFLSYKDYHKQLRLPFTIYADFDEKNTVHRSRPKQVFYGKIPAPSSLWILLCCGLGTR 210
Query: 227 GSEKTISPIPSRRSVKSFIPILSLRR 304
G +T +P R + S IP+ LRR
Sbjct: 211 GLLQTTRSLPRGRGILSGIPMSHLRR 236
>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 926
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 119 FPARLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISP 250
FP +LSP++ + + PG+ P A++ P+ + T P
Sbjct: 337 FPEKLSPSKEREVTKQPEAPGATAQPEAPDATAQPEAPDATAQP 380
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 122 PARLSPNRTSKESVGNGQPGSPGVSPTPSASSL-PQGSEKTISPIPSRRSVK 274
P + SP+ TS + P + + P+PS + + P S I P PS +K
Sbjct: 1284 PIKPSPSTTSTTPI-KPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIK 1334
>SB_18566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 247 PNTITEISQI-IYPDPESEKAIMGSVVYCIHHKEGCQWSDELRKLK 381
P T+I + ++ D +E+ I+ +V C +GC+W ELR L+
Sbjct: 21 PRFRTDIDAVDVFLDKAAERTILSFLVKC--PCKGCKWEAELRDLE 64
>SB_53480| Best HMM Match : Sigma70_r1_1 (HMM E-Value=5.7)
Length = 402
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 328 CIHHKEGCQWSDELRKLKAHL 390
C+ HK+ CQ ++E++ LKA +
Sbjct: 5 CLSHKDACQANEEIQTLKADI 25
>SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 373 KLKAHLNTCKHDAVLCAAH-CGAMIPRVLMQDHLRYTCPRRRANCE 507
+++ HL C H+ + C C + R M+ H TC + CE
Sbjct: 432 QIQKHLTKCDHEVIKCVFDGCDTRLARNSMEKH-EETCEWKIVTCE 476
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +3
Query: 330 HPSQRRMSVVRRAPQ-TEGTSKYL--QARRGAMCRALRRHDTAGAHAGPPPLHVPAAPGQ 500
HP RMS+ R P TE S+Y+ G L + + P + + G
Sbjct: 321 HPYDDRMSIKVRHPYPTECQSRYVIHMLTEGVFADDLSQQPSQAGPQSESPESLANSQGN 380
Query: 501 LRACHTEFSGSALEEHQGN 557
TEF + L++H GN
Sbjct: 381 SHEM-TEFEHTELQQHDGN 398
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +2
Query: 128 RLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTI----SPIPSRRSVKSFIPILS 295
R+SP + + S GQ G + +PS S +T SP P RRS P S
Sbjct: 516 RVSPTQAVRPSSTQGQSAPVGRTKSPSRSYTSPRQRRTSPNNRSPPPRRRSPSPRRPSPS 575
Query: 296 LRRR 307
RRR
Sbjct: 576 PRRR 579
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 241 NLPNTITEISQIIYPDPESEKAIMGSVVYCI 333
NL +T+T+IS+ + + +A+ G VVY I
Sbjct: 1813 NLKSTLTDISKALRLSQSTTRAVNGKVVYLI 1843
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +2
Query: 110 TLSFPARLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISP-IPSRRSVKS 277
T S P+ RT + PG+P TPS S P T +P PS S S
Sbjct: 409 TPSTPSTPITPRTPSTPCTHSTPGTPSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPS 465
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/56 (37%), Positives = 24/56 (42%)
Frame = +2
Query: 110 TLSFPARLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISPIPSRRSVKS 277
T S P+ S T PG+PG TPS S P G+ T S PS S S
Sbjct: 487 TPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAP-GTPSTPS-TPSTPSTPS 540
>SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -1
Query: 550 WCSSSALPENSVWQARSWPGAAGTCSGGG 464
W S +N VW + + TC+GGG
Sbjct: 160 WAQSGECAKNPVWMKANCQKSCRTCNGGG 188
>SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)
Length = 723
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +3
Query: 402 ARRGAMCRALRRHDTAGAHAGPPPLHVPAAPGQLRACHTEFSGSALE 542
A +G R + AGA P VPA P A HT F G+ E
Sbjct: 633 ATKGKQKRQIISSPFAGAEGFPAYPAVPATPLGFGAVHTRFLGAPFE 679
>SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)
Length = 1169
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 473 RRWSCMSTRGIMAPQCAAHSTASCLQVFRCAFSLRSSSDH*HP 345
R W+ +STRG++ P +H + + F + S R +S H P
Sbjct: 770 RSWTAISTRGLIYPPARSHHSIITIPDFLIS-SFRPTSAHSAP 811
>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Frame = +3
Query: 366 APQTEGTSKYLQARRGAMCRALRRHDTA---GAHAGPPPLHVPAAPGQLRACHTEFSGSA 536
A T G S Q G + DT+ GA P P P++ G A T F G
Sbjct: 672 AQNTFGASSLKQNTFGGQPTSQGAFDTSTNLGAFGAPTP--TPSSFGSSTAPQTAFGGQG 729
Query: 537 LEEHQGNCGHEPIYC*NKCGA 599
+ ++ GN P N GA
Sbjct: 730 VPQNTGNAFGAPAASQNAFGA 750
>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
Length = 1033
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 257 MVLGRLFSPSPGGARRRLAWETLQGSLADHCR 162
+VLG+ F+ P R +A + + G+L + CR
Sbjct: 562 VVLGKYFAMQPNSPRVTMAQQLISGNLEELCR 593
>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 116 SFPARLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISPIPSRRSVKSFIPILS 295
++P SP+ +S SV P S SP+ S+ S+P S + P S S+ ++ + S
Sbjct: 139 TYPPSSSPS-SSFPSVPPSSPPSSS-SPSSSSPSVPPSSPPSSPPSSSSSSLPEYVMLFS 196
Query: 296 LRRR 307
R+
Sbjct: 197 QLRQ 200
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 104 TKTLSFPARLSPNRTSKESVGNGQPGSPGVS-PTPSASSLP 223
T +FP SP S G+G PGSPG P S +P
Sbjct: 1350 TSISNFPGFPSPGSGIPGSPGSGIPGSPGSGIPGSPGSGIP 1390
>SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2)
Length = 226
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 506 SLPHRVLG*RARGAPRKLRPRAHLLLEQVRRQGAAPTH 619
SLP R +G R KL H+ L + RR+ AP H
Sbjct: 109 SLPERQMG--QRNLTNKLLMNLHVRLRRWRRESRAPNH 144
>SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)
Length = 701
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 146 TSKESVGNGQPGSPGVSPTPSASSLPQGS 232
T+ ++ + P SPGV P PS + P GS
Sbjct: 172 TTMPTILSPLPQSPGVQPRPSVTPCPGGS 200
>SB_29001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 197 PTPSASSLPQGSEKTISPIPSRRSVKSFIPILSLRRR*WGRWCTASI 337
P S +PQ T PSRR + I + R WCTA I
Sbjct: 127 PIAPISCVPQAFWNTYHADPSRRVYRRHFEIRTKRTHLADLWCTAGI 173
>SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 809
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 506 SLPHRVLG*RARGAPRKLRPRAHLLLEQVRRQGAAPTH 619
SLP R +G R KL H+ L + RR+ AP H
Sbjct: 170 SLPERQMG--QRNLTNKLLMNLHVRLRRWRRESRAPNH 205
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/70 (24%), Positives = 27/70 (38%)
Frame = -2
Query: 627 AAACVGAAPWRRTCSSSRWARGRSFLGAPRARYPRTRCGRLAVGPAPRARVAEVVLHEHP 448
AA+ +A +++ A G +F G P P R +A G V H P
Sbjct: 841 AASAAASAAAAAASAAAYAAYGFTFQGTPTPPPPAARSSPVAFGSGGSTVPGSAVTHPVP 900
Query: 447 RYHGAAVRGT 418
RY ++ +
Sbjct: 901 RYDNSSANSS 910
>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 983
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 506 SLPHRVLG*RARGAPRKLRPRAHLLLEQVRRQGAAPTH 619
SLP R +G R KL H+ L + RR+ AP H
Sbjct: 344 SLPERQMG--QRNLTNKLLMNLHVRLRRWRRESRAPNH 379
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,470,668
Number of Sequences: 59808
Number of extensions: 488147
Number of successful extensions: 2537
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 2192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2517
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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