Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0688
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.80 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.80 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 173 QPGSPGVSPTPSASSLPQGSEKTISP 250
           QP S  + P PSA ++PQ +     P
Sbjct: 758 QPLSVSIPPPPSAQNVPQNTNSQAIP 783


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 173 QPGSPGVSPTPSASSLPQGSEKTISPIPSR 262
           QP S    P PS    PQ  ++   P PS+
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQ 44


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 480 RVAEVVLHEHPRYHGAAVR 424
           R+   +L +HP+ HG  V+
Sbjct: 189 RLLHGILSQHPQQHGLGVQ 207


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 285 GINDLTDLRDGIGEIVFSEPWGSEEA 208
           G+N L DL +G G  V    +GS +A
Sbjct: 374 GMNILGDLIEGTGRSVNPRYYGSLQA 399


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 508 PATPSSRVARSRST 549
           PATPS+ VA S +T
Sbjct: 238 PATPSAVVATSNAT 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,497
Number of Sequences: 438
Number of extensions: 4271
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)