Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0688
(631 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40070.1 68415.m04923 expressed protein 38 0.007
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c... 31 0.48
At3g09000.1 68416.m01053 proline-rich family protein 31 0.83
At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains ... 30 1.1
At3g28790.1 68416.m03593 expressed protein 30 1.5
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 29 1.9
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 29 1.9
At5g67440.1 68418.m08503 phototropic-responsive NPH3 family prot... 29 3.4
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 28 4.4
At5g25590.1 68418.m03045 expressed protein contains Pfam profile... 28 5.9
At5g21170.1 68418.m02530 5'-AMP-activated protein kinase beta-2 ... 28 5.9
At3g03770.1 68416.m00383 leucine-rich repeat transmembrane prote... 28 5.9
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 27 7.8
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 27 7.8
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 7.8
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 27 7.8
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 37.5 bits (83), Expect = 0.007
Identities = 36/146 (24%), Positives = 61/146 (41%)
Frame = +2
Query: 71 TENMVRSLSQWTKTLSFPARLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISP 250
TE+ R+ + S P S + S+ +G PGS +PT +S+L S+ +
Sbjct: 147 TESAARNHLTSRQQTSSPGLSSSSGASRRPSSSGGPGSRPATPTGRSSTLTANSKSSRPS 206
Query: 251 IPSRRSVKSFIPILSLRRR*WGRWCTASITKKDVSGQTSSAN*RHI*ILASTTRCYVPRT 430
P+ R+ S SL R ++ TK +++S + + T P T
Sbjct: 207 TPTSRATVSSATRPSLTN---SRSTVSATTKPTPMSRSTSLSSSRL-----TPTASKPTT 258
Query: 431 AAP*YRGCSCRTTSATRARGAGPTAS 508
+ G R+T +T + AGP+ S
Sbjct: 259 STARSAGSVTRSTPSTTTKSAGPSRS 284
>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 954
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 343 EGCQWSDELRKLKAHLNTCKHDAVLCAAHCGAMIPRVLMQDHLRYTCPRRRANC 504
EGC +++ H + C + C +C I R M H CP + NC
Sbjct: 198 EGCTAVFCANQMENHDSVCPFKIIPCEQNCSESIMRRDMDRHCITVCPMKLVNC 251
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 107 KTLSFPARLS--PNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISPIPSRRSVKSF 280
K +S PA + P+ + S+ + + S G SP+P+ +SL + + SP P+ S + +
Sbjct: 236 KPVSRPATPTRRPSTPTGPSIVSSKAPSRGTSPSPTVNSLSKAPSRGTSPSPTLNSSRPW 295
Query: 281 IP 286
P
Sbjct: 296 KP 297
>At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains
Pfam PF02176: TRAF-type zinc finger; similar to TNF
receptor associated factor 4 (GI:7274404) [Mus musculus]
(GI:7274404); similar to Cysteine rich motif Associated
to Ring and Traf domains protein (mCART1)(GI:1041446)
[Mus musculus]
Length = 192
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 VYCIHHKEGCQ-WSDELRKLKAHLNTCKHDAVLCAAHCGAMIPRVLMQDHLRYTCPRRRA 498
V+C + E C+ D + K A + A + + C I R + H CP+R
Sbjct: 29 VHCARNLEKCKICGDMVPKKHAEEHYLNTHAPIACSMCKETIEREIFDSHKGEICPKRIV 88
Query: 499 NCE 507
CE
Sbjct: 89 TCE 91
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 134 SPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISPIPS 259
S T K++ G+ SP SPTP+ S+ + +P PS
Sbjct: 258 SSGNTYKDTTGSSSGASPSGSPTPTPSTPTPSTPTPSTPTPS 299
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 134 SPNRTSKESVG--NGQP-GSPGVSPTPSASSLPQGSEK 238
S T K++ G +G P GSP SPTPS S+ + S K
Sbjct: 359 SSGDTYKDTTGTSSGSPSGSPSGSPTPSTSTDGKASSK 396
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 120 KLRVFVHCDRLRTMFSVHMHNTRSLNSTTRKE 25
K + +HC R + S H HN R LNST R E
Sbjct: 169 KFQWILHC---RHVESKHFHNPRDLNSTLRSE 197
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 134 SPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISP----IPSRRSVKSFIPILS 295
S +R+S+ G PG+SP+ S S+ + T++P KSF P+ S
Sbjct: 431 SASRSSESRPGPSTSSRPGLSPSSSIGSMASSEKSTLNPNAKEFKLNPKAKSFKPLQS 488
>At5g67440.1 68418.m08503 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 579
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 175 ARLPWSVSHAKRLLAPPGLGENNLP 249
AR+ WS ++ +R L PP + N++P
Sbjct: 179 ARVDWSYTYNRRKLLPPEMNNNSVP 203
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +2
Query: 104 TKTLSFPARLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISPIPSRRSVKSFI 283
T ++ A + + S G+G G P P P+A P+ T+ P+P +++ +
Sbjct: 497 TGSIGRTANQALTQNSNGEQGDGVYGDPNSFPGPAAFPPPRPGVPTVRPLPPPQNLALNL 556
Query: 284 P 286
P
Sbjct: 557 P 557
>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
PF04783: Protein of unknown function (DUF630)
Length = 775
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 131 LSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSE--KTISPIPSRRSVKSFIPILSLRR 304
L K+S N P SP P P +LP SP P +R++ +P +++R
Sbjct: 70 LDQQHYEKQSRNNVDPASPQPPPPPPIENLPPPPPPLPKFSPSPIKRAIS--LPSMAVRG 127
Query: 305 R 307
R
Sbjct: 128 R 128
>At5g21170.1 68418.m02530 5'-AMP-activated protein kinase beta-2
subunit, putative similar to Swiss-Prot:Q9QZH4
5'-AMP-activated protein kinase, beta-2 subunit (AMPK
beta-2 chain) [Rattus norvegicus]
Length = 283
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 125 ARLSPNRTSKESVGNGQPGSPGVSPTP 205
AR R S +S+ + PGSP SP+P
Sbjct: 34 ARSRHRRPSSDSMSSSPPGSPARSPSP 60
>At3g03770.1 68416.m00383 leucine-rich repeat transmembrane protein
kinase, putative may contain C-terminal ser/thr protein
kinase domain, similar to serine/threonine protein
kinase Pto GB:AAB47421 [Lycopersicon esculentum]
Length = 802
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 167 NGQPGSPGVSPTPSASSLPQGSEKTISPIPSRR 265
N P S SP+P+ASSLP S ++ + S R
Sbjct: 761 NSNPSSNLGSPSPAASSLPPPSRLHVTTLESPR 793
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 104 TKTLSFPARLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISPIPSRRS 268
TK S P+ SP+R K S G +P + SP P SS P ++ P P++++
Sbjct: 140 TKPGSSPSP-SPSRPPKRSRGPPRPPTRPKSPPPRKSSFP--PSRSPPPPPAKKN 191
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 104 TKTLSFPARLSPNRTSKESVGNGQPGSPGVSPTPSASSLPQGSEKTISPIPSRRS 268
TK S P+ SP+R K S G +P + SP P SS P ++ P P++++
Sbjct: 140 TKPGSSPSP-SPSRPPKRSRGPPRPPTRPKSPPPRKSSFP--PSRSPPPPPAKKN 191
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 176 PGSPGVSPTPSASSLPQGSEKTISPIPSRRSVKS 277
P P V+PTP S+P S ++P P SV S
Sbjct: 193 PSPPDVTPTPPTPSVP--SPPDVTPTPPTPSVPS 224
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 9 ESGRVAPFASSSSVNECCAYEQKTWC 86
+ G++ P A+SSS+++ C + WC
Sbjct: 46 DDGQIIPSATSSSLSDSCECKACPWC 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,371,774
Number of Sequences: 28952
Number of extensions: 318469
Number of successful extensions: 1325
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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