Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0687
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    69   5e-13
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    33   0.043
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    29   0.92 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   4.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   8.6  

>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 29/45 (64%), Positives = 37/45 (82%)
 Frame = -1

Query: 734 WRGIRDDNLSSVSGIEGCIFCHSNGFIGGNTTLEGALKMAIASLE 600
           WRGIRD+ LS ++GI GCIF H++GFIGGN T EGAL+MA  +L+
Sbjct: 276 WRGIRDEKLSELTGIPGCIFVHASGFIGGNQTFEGALEMARKALD 320


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +3

Query: 381 NHNKSRFISMLKAKFTAENISVEQANDDADVLIIETAIKKFSVQIQLLLLVRMLIYSSCL 560
           N   S F     +K    N    +    ADVL+    + K   Q+  +   + L+Y++CL
Sbjct: 145 NEFLSPFTKSFLSKIGESNTITVKGMPLADVLVFRKKVLKLVSQLSFMTDRKELVYTTCL 204

Query: 561 LLELQQSFISFV 596
            LE   ++ +FV
Sbjct: 205 ALEDDDAYTNFV 216


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 646 LPPMKPLLWQKIHPSIPETELRLSSRIPRHA 738
           + P+ PLL Q+I  S+P++ L  S + P HA
Sbjct: 794 ISPITPLLAQEIWQSLPDSYLNSSYQTPFHA 824


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 583 LFHSLASRLAMAIFKAPSNVVLPPMKP----LLWQKIHPSIPETELRL 714
           L++S A  +A++ +  PSNV +PP  P      W  I   I   +L L
Sbjct: 338 LYNSRARSVALSEYHQPSNVFVPPEDPDLPAFFWDPIINPITSRQLTL 385


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 97   NNTNSTYIIDGGFLLHRVVW 156
            NN  S Y+I G F+L  +VW
Sbjct: 972  NNQISLYVITGVFILSTIVW 991


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 191 LSKITLNVSSLSHTTRCNKNPPSI 120
           L + +LN+SSLSH  + +++ PS+
Sbjct: 184 LGRSSLNLSSLSHELQTSQDSPSL 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,548
Number of Sequences: 5004
Number of extensions: 60867
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)