BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0687 (743 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 69 5e-13 SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 33 0.043 SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 29 0.92 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.6 SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 4.9 SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 8.6 >SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 324 Score = 69.3 bits (162), Expect = 5e-13 Identities = 29/45 (64%), Positives = 37/45 (82%) Frame = -1 Query: 734 WRGIRDDNLSSVSGIEGCIFCHSNGFIGGNTTLEGALKMAIASLE 600 WRGIRD+ LS ++GI GCIF H++GFIGGN T EGAL+MA +L+ Sbjct: 276 WRGIRDEKLSELTGIPGCIFVHASGFIGGNQTFEGALEMARKALD 320 >SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 33.1 bits (72), Expect = 0.043 Identities = 19/72 (26%), Positives = 32/72 (44%) Frame = +3 Query: 381 NHNKSRFISMLKAKFTAENISVEQANDDADVLIIETAIKKFSVQIQLLLLVRMLIYSSCL 560 N S F +K N + ADVL+ + K Q+ + + L+Y++CL Sbjct: 145 NEFLSPFTKSFLSKIGESNTITVKGMPLADVLVFRKKVLKLVSQLSFMTDRKELVYTTCL 204 Query: 561 LLELQQSFISFV 596 LE ++ +FV Sbjct: 205 ALEDDDAYTNFV 216 >SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 973 Score = 28.7 bits (61), Expect = 0.92 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +1 Query: 646 LPPMKPLLWQKIHPSIPETELRLSSRIPRHA 738 + P+ PLL Q+I S+P++ L S + P HA Sbjct: 794 ISPITPLLAQEIWQSLPDSYLNSSYQTPFHA 824 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 27.9 bits (59), Expect = 1.6 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = +1 Query: 583 LFHSLASRLAMAIFKAPSNVVLPPMKP----LLWQKIHPSIPETELRL 714 L++S A +A++ + PSNV +PP P W I I +L L Sbjct: 338 LYNSRARSVALSEYHQPSNVFVPPEDPDLPAFFWDPIINPITSRQLTL 385 >SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces pombe|chr 3|||Manual Length = 1369 Score = 26.2 bits (55), Expect = 4.9 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 97 NNTNSTYIIDGGFLLHRVVW 156 NN S Y+I G F+L +VW Sbjct: 972 NNQISLYVITGVFILSTIVW 991 >SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharomyces pombe|chr 2|||Manual Length = 733 Score = 25.4 bits (53), Expect = 8.6 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -1 Query: 191 LSKITLNVSSLSHTTRCNKNPPSI 120 L + +LN+SSLSH + +++ PS+ Sbjct: 184 LGRSSLNLSSLSHELQTSQDSPSL 207 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,004,548 Number of Sequences: 5004 Number of extensions: 60867 Number of successful extensions: 173 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 173 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 353266144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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