Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0687
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46877| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_9836| Best HMM Match : La (HMM E-Value=6.5) 57 2e-08
SB_5848| Best HMM Match : DUF589 (HMM E-Value=5.4) 57 2e-08
SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094) 51 1e-06
SB_27217| Best HMM Match : XPG_N (HMM E-Value=0.8) 49 3e-06
SB_22850| Best HMM Match : CXC (HMM E-Value=0.22) 49 5e-06
SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67) 44 2e-04
SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11) 43 2e-04
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_59066| Best HMM Match : PRA-PH (HMM E-Value=5.9) 41 0.001
SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75) 40 0.002
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 39 0.004
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_40999| Best HMM Match : SAM_1 (HMM E-Value=7.9) 38 0.009
SB_45550| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_29710| Best HMM Match : LHC (HMM E-Value=3.3) 36 0.046
SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25) 31 0.99
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27) 29 4.0
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 5.3
SB_22341| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_36795| Best HMM Match : Conotoxin (HMM E-Value=7.1) 28 7.0
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 7.0
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 28 7.0
SB_8598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_46877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 61.7 bits (143), Expect = 6e-10
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Frame = +1
Query: 7 YPLTLFDDIGMR-KTQKSAIYDCFQTINVDINNTNST-----YIIDGGFLLHRVVWDSEE 168
+P +LFD + K K + D ++ + N T ++IDGG LLHRVVW
Sbjct: 38 FPASLFDSSLLPLKANKPVLADAIWSMTKESQPANDTGRGAHFVIDGGALLHRVVWPRGL 97
Query: 169 TFNVILDKYVQYVRRHFGSRVTVVFDGY 252
T+N I Y+QYV++ + R T+VFDGY
Sbjct: 98 TYNAICLLYIQYVQQRY-PRATIVFDGY 124
>SB_9836| Best HMM Match : La (HMM E-Value=6.5)
Length = 146
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 115 YIIDGGFLLHRVVWDSEETFNVILDKYVQYVRRHFGSRVTVVFDGY 252
++IDGG LLHRVVW T+N I Y+QYV++ + R T+VFDGY
Sbjct: 29 FVIDGGALLHRVVWPRGLTYNAICLLYIQYVQQRY-PRATIVFDGY 73
>SB_5848| Best HMM Match : DUF589 (HMM E-Value=5.4)
Length = 463
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 115 YIIDGGFLLHRVVWDSEETFNVILDKYVQYVRRHFGSRVTVVFDGY 252
++IDGG LLHRVVW T+N I Y+QYV++ + R T+VFDGY
Sbjct: 215 FVIDGGALLHRVVWPRGLTYNAICLLYIQYVQQRY-PRATIVFDGY 259
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +3
Query: 324 IIFDESMTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQANDDADVLIIETAIKKF 503
++FD M V + +F +N NK FI++L S A DADV+I++TAI K
Sbjct: 281 VLFDHDMVVNLKKDEFLSNKVNKQAFINLLSLNLVDAGYSTLHAEGDADVIIVDTAIAKA 340
Query: 504 SVQIQLLL 527
Q +L+
Sbjct: 341 REQTSILI 348
>SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094)
Length = 436
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 97 NNTNSTYIIDGGFLLHRVVWDSEE--TFNVILDKYVQYVRRHFGSRVTVVFDGY 252
N+ + Y++DGG LHRV W S E TF I +Y +YV +G + VVFDGY
Sbjct: 211 NDVDVQYVLDGGAHLHRVTWSSPETRTFKDICRRYCRYVSSKYGKAI-VVFDGY 263
>SB_27217| Best HMM Match : XPG_N (HMM E-Value=0.8)
Length = 154
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 103 TNSTY-IIDGGFLLHRVVWDSEETFNVILDKYVQYVRRHFGSRVTVVFDG 249
T S Y ++DGG LL+++ W + T + Y +YV R +G++VTVVFDG
Sbjct: 30 TGSVYHVLDGGSLLYKLQWPKQVTHAELCQHYCRYVVRKYGTQVTVVFDG 79
Score = 35.5 bits (78), Expect = 0.046
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 267 NIKAAEQRRRNAASSTSSDIIFDESMTVPTSQQKFFANNHNKSRFISMLK 416
++K+ +RR+A + S+ + F + M V + F + NK RF+SML+
Sbjct: 85 SVKSMTHQRRSAGKA-SATVTFSDGMKVTMKKDAFLTDAENKKRFVSMLQ 133
>SB_22850| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 418
Score = 48.8 bits (111), Expect = 5e-06
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = +1
Query: 10 PLTLFDD-IGMRKTQKSAIYDCF-----QTINVDINNTNSTYIIDGGFLLHRVVWDSEET 171
P LFD+ + MR K+ + +++ + T+ Y+IDGG LLH+ W T
Sbjct: 182 PTALFDNYMRMRTGDKAELIHHLVKLVPESVVATLPTTDLRYVIDGGGLLHKFAWPKNST 241
Query: 172 FNVILDKYVQYVRRHFGSRVTVVFDGY 252
+ I YV++V + + TVVFDGY
Sbjct: 242 YAEIFTLYVRHVCSSY-ANATVVFDGY 267
>SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67)
Length = 258
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +3
Query: 273 KAAEQRRRNAASSTSSDIIFDESMTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQ 452
K + RR++ S + FD M + + F +N NK RFI +L K +V
Sbjct: 38 KDSTHERRSSVCGPSVE--FDGKMVLRIKKDVFLSNPANKQRFIYLLGDKLQRSGYTVLH 95
Query: 453 ANDDADVLIIETAIK 497
A DAD+ I+ETAI+
Sbjct: 96 APGDADLAIVETAIQ 110
>SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)
Length = 715
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +3
Query: 273 KAAEQRRRNAASSTSSDIIFDESMTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQ 452
K + RR++ S + FD M + + F +N NK RFI +L K +V
Sbjct: 380 KDSTHERRSSVCCLSVE--FDGKMVLRIKKDVFLSNPANKQRFIYLLGDKLQRSGYTVLH 437
Query: 453 ANDDADVLIIETAIK 497
A DAD+ I+ETAI+
Sbjct: 438 APGDADLAIVETAIQ 452
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/75 (33%), Positives = 37/75 (49%)
Frame = +3
Query: 273 KAAEQRRRNAASSTSSDIIFDESMTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQ 452
K + RR++ S + FD M + + F +N NK R I +L K +V
Sbjct: 325 KDSTHERRSSVCGPSVE--FDGKMVLRIKKDVFLSNPANKQRLIYLLGDKLQRSGYTVLH 382
Query: 453 ANDDADVLIIETAIK 497
A DAD+ I+ETAI+
Sbjct: 383 APGDADLAIVETAIQ 397
>SB_59066| Best HMM Match : PRA-PH (HMM E-Value=5.9)
Length = 199
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/75 (33%), Positives = 37/75 (49%)
Frame = +3
Query: 273 KAAEQRRRNAASSTSSDIIFDESMTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQ 452
K + RR++ S + FD M + + F +N NK R I +L K +V
Sbjct: 85 KDSTHERRSSVCGPSVE--FDGKMVLRIKKDVFLSNPANKQRLIYLLGDKLQRSGYTVLH 142
Query: 453 ANDDADVLIIETAIK 497
A DAD+ I+ETAI+
Sbjct: 143 APGDADLAIVETAIQ 157
>SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/75 (33%), Positives = 37/75 (49%)
Frame = +3
Query: 273 KAAEQRRRNAASSTSSDIIFDESMTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQ 452
K + RR++ S + FD M + + F +N NK R I +L K +V
Sbjct: 236 KDSTHERRSSVCGPSVE--FDGKMVLRIKKDVFLSNPANKQRLIYLLGDKLQRSGYTVLD 293
Query: 453 ANDDADVLIIETAIK 497
A DAD+ I+ETAI+
Sbjct: 294 APGDADLAIVETAIQ 308
>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
Length = 1167
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 339 SMTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQANDDADVLIIETAIK 497
+M + + F +N NK RFI++L K +V A DAD+ I+ETAI+
Sbjct: 903 AMVLRIKKDVFLSNPENKQRFINLLGDKLRRSGYTVLHAPGDADLAIVETAIQ 955
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 103 TNSTYIIDGGFLLHRVVWDSEETFNVILDKYVQYVRRHFGSRVTVVFDG 249
T+ Y+IDGG LL++ W T+ I Y ++V + + TVVFDG
Sbjct: 137 TDLRYVIDGGGLLYKFAWPKNSTYAEICTLYGRHVCSSY-ANATVVFDG 184
>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 38.3 bits (85), Expect = 0.007
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 76 QTINVDINNTNSTYIIDGGFLLHRVVWDSEETFNVILD-KYVQYVRRHFGSRVTVVFDGY 252
Q+ V IN S + G L R + V+L K QYV+R FG++VTVVFDGY
Sbjct: 176 QSSPVTINPLKSIFARHGSLKL-RATAPNHVALEVLLPRKGRQYVKRKFGNQVTVVFDGY 234
>SB_40999| Best HMM Match : SAM_1 (HMM E-Value=7.9)
Length = 233
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 342 MTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQANDDADVLIIETAIK 497
M + + F +N NK RFI +L K +V A DAD+ I+ETAI+
Sbjct: 1 MVLRIKKDVFLSNPANKQRFIYLLGDKLQRSGYTVLHAPGDADLAIVETAIQ 52
>SB_45550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +3
Query: 342 MTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQANDDADVLIIETAIKKFSVQIQL 521
M + F +NN N ML +K +V QA DADVLI+ TAI+K + +
Sbjct: 1 MVATLKKDIFLSNNAN------MLSSKLQQAGYAVRQALGDADVLIVSTAIEKAKTETTV 54
Query: 522 LL 527
L+
Sbjct: 55 LI 56
>SB_29710| Best HMM Match : LHC (HMM E-Value=3.3)
Length = 343
Score = 35.5 bits (78), Expect = 0.046
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 199 QYVRRHFGSRVTVVFDGY 252
QYV+R FG++VTVVFDGY
Sbjct: 192 QYVKRKFGNQVTVVFDGY 209
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 199 QYVRRHFGSRVTVVFDGY 252
QYV+R +G++VTVVFDGY
Sbjct: 85 QYVKRKYGNQVTVVFDGY 102
>SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)
Length = 781
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 282 EQRRRNAASSTSSDI-IFDESMTVPTSQQKFFANNHNKSRFISMLKAKFTAENISVEQAN 458
E+R R AA+STS ++ I + +P KF ++ NK L T + +EQ
Sbjct: 402 EERSRRAATSTSLEVQISGPATPIPKQWGKFITSSKNKVNLCEFLTKSLT--ELGMEQLE 459
Query: 459 DDADVLI 479
D +++
Sbjct: 460 SDQRLVL 466
>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
Length = 687
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -1
Query: 260 IISYPSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTTRCNKN 132
I+SY NTTV + P R + +S T+NVS+ S T+ +N
Sbjct: 314 ILSY--NTTVIVTPNTTRLVTSKISSFTVNVSANSTTSLIQQN 354
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 411 LKAKFTAENISVEQANDDADVLIIETAIK 497
LKAK ++ + ++Q N+DAD LI + ++
Sbjct: 3292 LKAKLASQEVELKQKNEDADKLIQKVGVE 3320
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 966 PYNTTVIATPNTTRLVTSMISSSTVNVSAISTTS 999
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 162 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 195
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 363 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 396
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 564 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 597
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 1368 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 1401
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 1770 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 1803
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 765 PYNTTVIATPNTTRLATSTISSSTVNVSAISTTS 798
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 1167 PYNTTVIATPNTTRLATSTISSSTVNVSAISTTS 1200
>SB_22341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 270 IKAAEQRRRNAASSTSSDIIFDESMTVPTSQQKFFANNHNKS 395
+ RR ++ S+ + FDE + +P+S+++F A +S
Sbjct: 104 VNVKHPRRNGSSCRHSNSVNFDEFVVIPSSREEFCAGKFKQS 145
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 162 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 195
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 363 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 396
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHT 150
P NTTV P R + +S T+NVS++S T
Sbjct: 564 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTT 596
>SB_36795| Best HMM Match : Conotoxin (HMM E-Value=7.1)
Length = 188
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 206 TY*TYLSKITLNVSSLSHTTR 144
TY TY+++ITL S+LSH R
Sbjct: 17 TYRTYINEITLKFSNLSHDIR 37
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 273 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 306
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 474 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 507
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS +S T+
Sbjct: 675 PHNTTVIATPNTTRLVTSTISSSTVNVSDISTTS 708
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 145 PYNTTVIATPNTTRMVTSSISSSTVNVSAISTTS 178
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 248 PSNTTVTLEPKCRRTY*TYLSKITLNVSSLSHTT 147
P NTTV P R + +S T+NVS++S T+
Sbjct: 346 PYNTTVIATPNTTRLVTSTISSSTVNVSAISTTS 379
>SB_8598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 258 YTRNIKAAEQRRRNAASSTSSDIIF-DESMTVPTSQQKFFANNHNKSRFISMLKAKFTAE 434
+T N A +A +++SD +F + V TS ++ + F S A FT+
Sbjct: 41 FTSNTYAVFTSNSDAVFTSNSDAVFTSNTYAVFTSNSDAVFTSNTYAVFTSNSDAVFTSN 100
Query: 435 NISVEQANDDA 467
+V +N DA
Sbjct: 101 TYAVSPSNSDA 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,483,857
Number of Sequences: 59808
Number of extensions: 408240
Number of successful extensions: 1131
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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