Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0683
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 79 4e-15
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 36 0.023
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 34 0.093
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 31 0.66
03_05_1168 - 30890167-30890643 30 2.0
06_03_0298 - 19272257-19273714 29 3.5
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 3.5
02_05_0192 + 26602247-26602617,26602701-26603016 29 3.5
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 28 6.1
04_04_0395 - 24911449-24911719,24912048-24912400,24912486-249125... 28 8.1
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = +3
Query: 51 MADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEII-EGKKLTEIIN 227
M + KN V ++GSGNWGS ++++ N A L +F D V MWV+EEI+ GKKL+E IN
Sbjct: 1 MENGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESIN 60
Query: 228 ETHENVKY 251
+ +EN KY
Sbjct: 61 QANENCKY 68
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/60 (55%), Positives = 44/60 (73%)
Frame = +2
Query: 257 GHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIA 436
G KL +NV+A PD+ A KDA++L+FV PHQFV IC L+GK++P +SLIKG +IA
Sbjct: 71 GIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEGISLIKGMEIA 130
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 260 HKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDI 433
H+LP N+ A +A AD VP QF + + + P +SL KG ++
Sbjct: 161 HRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKLPFISLSKGLEL 218
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 34.3 bits (75), Expect = 0.093
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 33 DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAAS 146
DC +L MAD ++G W S +A+ VG A S
Sbjct: 152 DCTVLTMADDSTIKAKVVIGCDGWNSVVARYVGLGAPS 189
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 31.5 bits (68), Expect = 0.66
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -3
Query: 567 DNQWSFRRIFPQQPPMQYWL 508
D++W R+F +QPP+++WL
Sbjct: 93 DSEWVICRVFKKQPPIEHWL 112
>03_05_1168 - 30890167-30890643
Length = 158
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 620 EVVCLYDIPH*RSQHYVPTTNGRFAEFFLSNLRCNIGSINTAQGIFRHL-VIICDIRS 450
E V L+ PH R P RF ++ L G++ + + RHL ICD+RS
Sbjct: 18 EGVSLHPWPHRRVCFAFPPLRRRFDATAVTLLDYGAGNVRSVRNAIRHLGFSICDVRS 75
>06_03_0298 - 19272257-19273714
Length = 485
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 69 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTM---WVYE 188
K KVC+VG G G A A+ + R +S E R + W+Y+
Sbjct: 2 KKKVCVVGGGLVGLAAARELQREGHDVSVLEQRGGVGGQWLYD 44
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 114 IAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVK 248
++K++G ++ ED + + YEE+ + KKL I+ ET N++
Sbjct: 366 LSKMIGAVQTLVAQCED-LKLKYYEEMAKRKKLHNIVEETKGNIR 409
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +1
Query: 523 RRLLRKNSAKRPLVVGT*CWL--R*CGI-SYRQTTSGSWWWTMRTQSKICGALKNI 681
RRL + R G CW R CG S+R+ +WWW Q + A+ +
Sbjct: 46 RRLSAGSGCGRWWSAGDACWRQRRRCGRGSWRRRLLAAWWWRATAQRRFAEAVVRV 101
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 48 DMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFE---DRVTMWVYEE 191
D+ + KVC++G+G G A A+ + R +++ E D W+Y++
Sbjct: 7 DVGKPRASRKVCVIGAGMAGLAAARELRREGHAVTVLEQAGDVGGQWLYDD 57
>04_04_0395 -
24911449-24911719,24912048-24912400,24912486-24912560,
24912799-24912891,24912988-24913231,24913437-24913564
Length = 387
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 310 CSFNYIWNSNNIRRQFVASRYLTFS*VSLIISVNFFPSIISSY 182
C F IW + RR+ + S+ + + SL+ S + S+I SY
Sbjct: 273 CGFRAIWVVPSRRRKRIGSQLMDAASCSLLCSASISKSLILSY 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,500,064
Number of Sequences: 37544
Number of extensions: 300093
Number of successful extensions: 813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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