Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0683
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)              75   4e-14
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13

>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
          Length = 358

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
 Frame = +3

Query: 60  KQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETH 236
           ++ + +V I+GSGNWGS IA+IVG+N    ++ F + V M+ YEE+++G KLTEIIN  H
Sbjct: 3   EEGRKRVAIIGSGNWGSVIARIVGQNVKEHNDVFFEGVEMYTYEELVDGVKLTEIINTKH 62

Query: 237 ENVKY 251
            NVKY
Sbjct: 63  MNVKY 67



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
 Frame = +2

Query: 266 LPSNVVAVPDVVEAAKDADLLIFVVPHQ---FVRTICSTLLGKIKPT--AAALSLIKGFD 430
           +P N+ A PDVVE  KDAD+L+FVVPHQ     +T  + +   IK       +S++ G +
Sbjct: 73  IPENIHANPDVVECVKDADILVFVVPHQGLDHTKTGLTLVSNVIKEALDLPEVSVLMGAN 132

Query: 431 IAEVVASILY 460
           +A+ VA  L+
Sbjct: 133 LAKEVARELF 142



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +3

Query: 507 GANIASEVAEEKFCETTIG 563
           GAN+A EVA E F E TIG
Sbjct: 130 GANLAKEVARELFGEATIG 148


>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/59 (54%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  KVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHENVK 248
           KV ++GSGNWG+AIA+I+G N     + F ++V M+VY+ +I G+KL+EIIN  HENVK
Sbjct: 229 KVTVLGSGNWGTAIARIIGDNVRKKPHLFHNKVQMYVYDSLINGRKLSEIINTEHENVK 287



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 507 GANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFR 623
           GAN+A EVA+  F ETTIG R      + ++++   YF+
Sbjct: 352 GANLADEVAKGFFSETTIGSRLEEHGYIFKELLNQPYFK 390



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 335 VVPHQFVRTICSTLLGKIKPTAAALSLIKGFD 430
           + P+ F+ ++C  +   IKP   A+SLIKG D
Sbjct: 294 IPPNVFLDSVCQKIKSSIKPDVLAISLIKGLD 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,884,280
Number of Sequences: 59808
Number of extensions: 343161
Number of successful extensions: 805
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)