Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0681
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   0.68 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   2.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   3.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.3  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   8.4  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 258 VKKMEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEESIPDFNICSENV 404
           V K +    L+S    APNE   IF   +   DFL   + + NI S ++
Sbjct: 391 VSKFDKRSKLVSILEKAPNERTLIFVETKRNADFLATFLSEQNIQSTSI 439


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +1

Query: 67  YNKIFTSLKCNYKIC--YISEEVLYCLQYY 150
           Y+K F   + + KI   +  E  LYC  YY
Sbjct: 52  YSKSFHRNEIHIKIVLMFFKEASLYCFNYY 81


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +3

Query: 108 MLYK*RSFILFTVL*PLLSFYRNKMNSKNFPKIQDFLLK--YV***ALLNQSVKKMEF 275
           +L K   F+L  ++ P+++FY   + + N  +I+ F+ K  Y+   + +   +KKM++
Sbjct: 114 LLLKHNLFLLDNIVKPIIAFYYKPIKTLNGHEIK-FIRKEEYISFESKVFHKLKKMKY 170



 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 2   GNVMFPFICKLV 37
           GNV  P +CKL+
Sbjct: 257 GNVKIPVLCKLI 268


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 363 RENPNSPGPWRRSP 322
           ++N  SP P +RSP
Sbjct: 691 KQNEKSPSPQQRSP 704


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 110 HIL*LHFNEVNILLYQYLFITIYV 39
           HI   HF  + ++ Y Y+   IY+
Sbjct: 204 HITMAHFKIIQVVPYCYINCLIYL 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,072
Number of Sequences: 336
Number of extensions: 2593
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)