Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0681
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   4.9  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   6.5  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   6.5  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 161  EFLSEQNEF*KFSENTGFFTKVCL 232
            EF  ++  + ++ EN GFF  +C+
Sbjct: 1268 EFTKQKKYYEQYKENLGFFDSLCI 1291


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 267 MEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEESIPDFNICS 395
           +E +EG+  D+   P    E   +D D   F +E+    ++CS
Sbjct: 258 LEIQEGMQKDSSLVPVYKNEPLIVDADDYFFTDENKQTLSLCS 300


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 143 STMTSTEFLSEQNEF*KFSENTGFFTKVCLVISITKSKCK 262
           S +T+ E +  Q E  + +++TG   K+C  + I  +  K
Sbjct: 143 SNITNNELMKYQEEATQLAKDTGLSLKICTDVLICSNDYK 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,680
Number of Sequences: 5004
Number of extensions: 41997
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)