Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0681
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    29   1.8  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    28   3.1  
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038...    28   3.1  
At1g03180.1 68414.m00295 hypothetical protein                          27   5.5  
At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-...    27   9.6  

>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 261 KKMEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEESIPD 380
           +K  F +     TW  P ELM +F       D+ E S PD
Sbjct: 218 RKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPD 257


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +3

Query: 153 PLLSFYRNKMNSKNFPKIQDFLLKYV***ALLNQSVKKMEFEEGLMSDTWTAPNELMEIF 332
           PLLS    +M S+    I + LLK+     L+ Q+VK       L     +   EL E F
Sbjct: 544 PLLSDVEMEMESEADKIISEHLLKFKDINGLVEQNVKLRNLVRSLSEQIESRETELKETF 603

Query: 333 SMD 341
            +D
Sbjct: 604 EVD 606


>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
           Nuf2 family domain; similar to Myosin-like protein NUF2
           (Nuclear filament-containing protein 2) (Nuclear
           division protein nuf2) (Swiss-Prot:Q10173)
           [Schizosaccharomyces pombe]
          Length = 974

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 246 LNQSVKKMEFEEGLMSDTWTAP-NEL 320
           LN+S+K++E E+ +M D WT   NEL
Sbjct: 332 LNESLKQLEKEKAVMFDDWTKQLNEL 357


>At1g03180.1 68414.m00295 hypothetical protein
          Length = 275

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 304 RRQMNSWRSSPWTRTIWIFSRSQFQISTYALKMY 405
           R Q N+  S P    IW FS SQF  S+Y L  +
Sbjct: 229 RTQDNATNSPPTNDLIWYFSYSQF--SSYTLNKF 260


>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 646

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 267 MEFEEGLMSDTWTAPNELMEIFSMDQDYL 353
           +E ++   S  WT+P E  +IFS+ + Y+
Sbjct: 614 VETQQAATSPDWTSPFEGKDIFSLSRQYV 642


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,312,661
Number of Sequences: 28952
Number of extensions: 196841
Number of successful extensions: 451
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)