Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0678
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 146 2e-36
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 27 1.4
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 2.4
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 27 2.4
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 26 3.2
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 9.8
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 9.8
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 9.8
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 146 bits (354), Expect = 2e-36
Identities = 63/84 (75%), Positives = 77/84 (91%)
Frame = +2
Query: 257 FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAI 436
+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAI
Sbjct: 70 YFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAI 128
Query: 437 ILAKLSVLPVRRGYWGNKIGKPHT 508
I+ KLS++P+RRGYWG +G PHT
Sbjct: 129 IMGKLSIMPIRRGYWGTALGDPHT 152
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/41 (65%), Positives = 37/41 (90%)
Frame = +3
Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
++++KEWVPVTKLGRLV+ GKI +E IYL+SLPIKE++I+
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIV 68
Score = 28.3 bits (60), Expect = 0.80
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 508 LPCKVTGKCGSVTV 549
+P KV+GKCGSVTV
Sbjct: 153 VPVKVSGKCGSVTV 166
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIISSSDRP*MMRFLRSCL 305
+E + W+ + + R +G IDK++ L +K F IS+SDR + + SC+
Sbjct: 355 EESPQIWILI--ISRFSSDG-IDKIDVQNFILLILKFFGFAISASDRRSFLNLIMSCV 409
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 188 RKNRQTREHLLVFFTNQRIRDHYFFLG 268
RK EH+LVFF N ++ D+Y ++G
Sbjct: 2149 RKRLFAAEHMLVFFQNCKL-DYYRYVG 2174
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 227 FTNQRIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAF 352
F QRI + Y +N + K +Q+ RAG+ R K F
Sbjct: 322 FNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGRTMRGKVF 363
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 165 KLGRLVREGKIDKLESIYLFSLPIKEFEIIISSSDRP*MMRFLRSCLYRN 314
+ GR +R GK+ +L + +SL +EFE I + D ++ FL+ +N
Sbjct: 353 RAGRTMR-GKVFRLYTEKAYSLMKEEFEADILNCDMSPLVLFLKGLGLKN 401
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 271 RSEEEIMISNSLIGKENK*MLSSLSIFPSRTR 176
RSEE+I ++NSL+ K N + LSI R +
Sbjct: 225 RSEEQIQLANSLLQKLNACKILFLSIKKRRIK 256
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 215 LLVFFTNQRIR-DHYFFLGPSLNDEVLKIMP 304
LL FF + ++ DH +LGPS+ + + +P
Sbjct: 65 LLKFFAAEGLKQDHVIWLGPSIGEMWFRQLP 95
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = -2
Query: 301 HDLKNLIIQGRSEEE 257
++LKN+++QG S+EE
Sbjct: 1017 YELKNILVQGYSQEE 1031
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 421 GSGDFLAALHTQTNMTVVVANGNKCLETCA 332
G+GD H +T T +V +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,100
Number of Sequences: 5004
Number of extensions: 42482
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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