Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0678
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 157 5e-39
07_01_0756 + 5819367-5820038,5820847-5821005 154 4e-38
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 41 6e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.5
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 27 7.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 157 bits (381), Expect = 5e-39
Identities = 72/98 (73%), Positives = 84/98 (85%), Gaps = 2/98 (2%)
Frame = +2
Query: 221 VFFTNQRIRDHYFF--LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGV 394
++ + +++H L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGV
Sbjct: 65 IYLHSLPVKEHQIVETLVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGV 124
Query: 395 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 508
KC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHT
Sbjct: 125 KCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHT 162
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/41 (58%), Positives = 36/41 (87%)
Frame = +3
Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I+
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIV 78
Score = 33.9 bits (74), Expect = 0.087
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 508 LPCKVTGKCGSVTV 549
+PCKVTGKCGSVTV
Sbjct: 163 VPCKVTGKCGSVTV 176
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 154 bits (374), Expect = 4e-38
Identities = 71/98 (72%), Positives = 83/98 (84%), Gaps = 2/98 (2%)
Frame = +2
Query: 221 VFFTNQRIRDHYFF--LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGV 394
++ + +++H L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGV
Sbjct: 68 IYLHSLPVKEHQIVEQLVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGV 127
Query: 395 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 508
KC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 128 KCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 165
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/41 (60%), Positives = 36/41 (87%)
Frame = +3
Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I+
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIV 81
Score = 33.9 bits (74), Expect = 0.087
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 508 LPCKVTGKCGSVTV 549
+PCKVTGKCGSVTV
Sbjct: 166 VPCKVTGKCGSVTV 179
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 278 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 457
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 458 LPV 466
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 350 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 445
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 412 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 296
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -3
Query: 549 DCYGTTLAGDL--AREVCGFPILLP 481
D GTT GD+ A +VCGFP+ P
Sbjct: 24 DGVGTTAEGDVFAACDVCGFPVCRP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,581,272
Number of Sequences: 37544
Number of extensions: 305326
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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