Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0678
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 163 5e-41
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 163 5e-41
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 163 5e-41
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 163 5e-41
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 163 7e-41
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 163 9e-41
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 7e-06
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.7
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.6
At4g26850.1 68417.m03865 expressed protein 28 4.8
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 4.8
At3g01450.1 68416.m00069 expressed protein 27 6.3
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 27 8.3
At3g27310.1 68416.m03413 expressed protein 27 8.3
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 163 bits (397), Expect = 5e-41
Identities = 76/90 (84%), Positives = 83/90 (92%)
Frame = +2
Query: 239 RIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 418
+I DH +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 419 AIRGAIILAKLSVLPVRRGYWGNKIGKPHT 508
AIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 138 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++II
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 508 LPCKVTGKCGSVTV 549
+PCKVTGKCGSVTV
Sbjct: 173 VPCKVTGKCGSVTV 186
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 163 bits (397), Expect = 5e-41
Identities = 76/90 (84%), Positives = 83/90 (92%)
Frame = +2
Query: 239 RIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 418
+I DH +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 419 AIRGAIILAKLSVLPVRRGYWGNKIGKPHT 508
AIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 138 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++II
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 508 LPCKVTGKCGSVTV 549
+PCKVTGKCGSVTV
Sbjct: 173 VPCKVTGKCGSVTV 186
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 163 bits (397), Expect = 5e-41
Identities = 76/90 (84%), Positives = 83/90 (92%)
Frame = +2
Query: 239 RIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 418
+I DH +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 419 AIRGAIILAKLSVLPVRRGYWGNKIGKPHT 508
AIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 138 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++II
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 508 LPCKVTGKCGSVTV 549
+PCKVTGKCGSVTV
Sbjct: 173 VPCKVTGKCGSVTV 186
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 163 bits (397), Expect = 5e-41
Identities = 76/90 (84%), Positives = 83/90 (92%)
Frame = +2
Query: 239 RIRDHYFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVAT 418
+I DH +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 419 AIRGAIILAKLSVLPVRRGYWGNKIGKPHT 508
AIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 138 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++II
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 508 LPCKVTGKCGSVTV 549
+PCKVTGKCGSVTV
Sbjct: 173 VPCKVTGKCGSVTV 186
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 163 bits (396), Expect = 7e-41
Identities = 72/82 (87%), Positives = 80/82 (97%)
Frame = +2
Query: 263 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 442
+GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 83 VGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIIL 142
Query: 443 AKLSVLPVRRGYWGNKIGKPHT 508
AKLSV+P+RRGYWGNKIGKPHT
Sbjct: 143 AKLSVVPIRRGYWGNKIGKPHT 164
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/39 (69%), Positives = 36/39 (92%)
Frame = +3
Query: 138 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++II
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQII 79
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 508 LPCKVTGKCGSVTV 549
+PCKVTGKCGSVTV
Sbjct: 165 VPCKVTGKCGSVTV 178
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 163 bits (395), Expect = 9e-41
Identities = 73/82 (89%), Positives = 79/82 (96%)
Frame = +2
Query: 263 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 442
+GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 92 IGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIIL 151
Query: 443 AKLSVLPVRRGYWGNKIGKPHT 508
AKLSV+PVRRGYWGNKIGKPHT
Sbjct: 152 AKLSVVPVRRGYWGNKIGKPHT 173
Score = 58.0 bits (134), Expect = 4e-09
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +3
Query: 138 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEII 254
++++WVPVTKLGRLV G I ++E IYL SLP+KE++II
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQII 88
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 508 LPCKVTGKCGSVTV 549
+PCKVTGKCGSVTV
Sbjct: 174 VPCKVTGKCGSVTV 187
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 7e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 281 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 460
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 461 PV 466
V
Sbjct: 209 QV 210
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -3
Query: 489 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 310
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 309 CTGMILRTSSFR 274
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 347 AFVAIGDNNGHIGLGVKCSKE 409
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At4g26850.1 68417.m03865 expressed protein
Length = 442
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 367 VANGNKCLETCALSGTCLFLYRHDLKNLIIQGRSEEEIMISNSLI 233
V G CL C L+G L LY KNL+ +S E+++IS+ I
Sbjct: 24 VGCGRNCLGACCLNGARLPLYA--CKNLV---KSGEKLVISHEAI 63
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 123 HDHGRDHDRVHEDRH 79
HDH DHD H D H
Sbjct: 320 HDHNHDHDHHHHDGH 334
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 432 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 310
A A+ H +P + P L P N R+R A CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.1 bits (57), Expect = 8.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 123 HDHGRDHDRVHEDRHG 76
HDHG HD H HG
Sbjct: 158 HDHGHGHDHGHSHDHG 173
>At3g27310.1 68416.m03413 expressed protein
Length = 251
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 218 LVFFTNQRIRDHYFFLGPSLNDEVLKIMPVQKQTRA 325
+V+F+N + +D P LN+E+L + ++ T+A
Sbjct: 177 IVYFSNDQPKDDGGSSTPYLNEEILSLKDLEAMTKA 212
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,453,543
Number of Sequences: 28952
Number of extensions: 238706
Number of successful extensions: 648
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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