Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0677
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 62 5e-11
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.36
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 29 0.82
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 28 1.1
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 28 1.4
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 27 1.9
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 27 3.3
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 4.4
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 7.7
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 7.7
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 62.5 bits (145), Expect = 5e-11
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Frame = +2
Query: 260 IYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI--HDK 433
+YL L N+ LFY ++ ++ EM+PI+YTPT G A ++F +YR P G ++ I +D
Sbjct: 74 LYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDIDHNDL 133
Query: 434 GHVYDVLKNWPETD-VRAIVVTDGE 505
++ L + ++D V I++TD E
Sbjct: 134 SYIKQQLSEFGKSDSVEYIIITDSE 158
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +1
Query: 511 LGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPITIDVGTNTQSMLDDPLYIGLR 678
LG+GD G G+ I V K L T G+ P++ LPI +DVGTN ++ + Y+GLR
Sbjct: 161 LGIGDQGVGGVLISVAKGHLMTLCAGLDPNRFLPIVLDVGTNNETHRKNHQYMGLR 216
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 82 LSGLDHLKHPGLNKGMAFTIEERQSW 159
L G+ L P NK AFT EERQ +
Sbjct: 13 LKGVTLLNSPRYNKDTAFTPEERQKF 38
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 629 PTSIVMGRH*CGLMPPSAV*SASLPTGMPI--PHAPKSPRP 513
P S+ MG +PPSA + LP GMP P P +P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = -2
Query: 301 EQMLIAVQEPHKIDVLLSGFSYLSIESL---HSSTCSSCVLTRGGNNPWI 161
E + + PH+I L FS + I + S CS C++ W+
Sbjct: 557 EDQTVLGELPHQIRGFLHNFSLMKISGMAYPQCSACSECIINEWNREKWM 606
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 346 HNWHHFSHVIRDETVEQMLIAVQEPHKIDVLLSGFSYLSIESLHSSTCSS 197
H W +SHVI L + + + S L+I LHS+T S
Sbjct: 224 HGWFDYSHVISRFNEVPALYVISGVILVSIAFFNVSGLAITKLHSATTRS 273
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 666 VQRVVQHRLG-VRTHVDSDGQTLMRLDASERGVEREFAHRD 547
V VV++ G V T V SDG +RLD RG+ + F H D
Sbjct: 488 VSGVVENVRGSVITMVSSDG---LRLDVPSRGLRKRFRHGD 525
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 648 HRLGVRTHVDSDGQTLMRLDASERGVE 568
+RLGV+ H D+D TLM D + +G+E
Sbjct: 269 NRLGVQEHTDADALTLMSQD-NVKGLE 294
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 671 PMYSGSSSIDWVFVPTSIVMGRH*CGLMPPSAV*SASLPT 552
P+ ++ +VFVP+ +GR CG+ P V SAS+ T
Sbjct: 67 PLLCEDKNVPYVFVPSKAALGRA-CGVSRP--VISASITT 103
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 401 PRGLFITIHDKGHVYDVLKNWPETDVRA 484
P GL+I + +K +D + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 228 IDRYENPLNSTSILWGSWTAMSICS--TVSSRITW 326
+ + ++ LN TS++ G+W + S VS +TW
Sbjct: 65 VGKGDSHLNHTSVMTGNWNILPYPSFGKVSPNVTW 99
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 7.7
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = -2
Query: 490 NNGADVRLRPVLKNIVYMSLIVDRDEEAPWSAVHKAELLTGQANRRSVHNWHHFSHVIRD 311
++G+ + +P+LK L++ + PW + + + L + N +H + IR
Sbjct: 414 SSGSSLAKKPILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFSNRNHAT--IRS 471
Query: 310 ETVEQMLIAVQEPH-KIDVLLSGFSYLSIESLHSSTCSSCVLTRGGNNPWIPKTDAL 143
Q + + H + + + I+SL S + S+ T N+ P D +
Sbjct: 472 ALFSQRYPSHSKRHIHFNDRVQQCIAVDIDSLPSDSESASYNTDDANSVVSPSKDGI 528
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,392
Number of Sequences: 5004
Number of extensions: 70277
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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