Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0677
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical... 118 3e-27
Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z46996-2|CAA87102.1| 679|Caenorhabditis elegans Hypothetical pr... 29 4.1
AC024810-5|AAF60763.1| 507|Caenorhabditis elegans Hypothetical ... 29 4.1
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 5.4
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 5.4
Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 28 7.1
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 28 7.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 9.4
U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidan... 27 9.4
>AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical
protein Y48B6A.12 protein.
Length = 620
Score = 118 bits (285), Expect = 3e-27
Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 QYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDK 433
+YI L L DRNE L+YR + DNV E+MPIVYTPTVG ACQ FG +YR P+GL+ITI+D
Sbjct: 107 KYIQLDSLQDRNEKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITINDN 166
Query: 434 --GHVYDVLKNWPETDVRAIVVTDGER 508
++ +L NWP +VRAIV+TDGER
Sbjct: 167 SISKIHQILANWPTENVRAIVITDGER 193
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = +1
Query: 511 LGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPITIDVGTNTQSMLDDPLYIGLR 678
LGLGDLG G+GIPVGKLALY AL GI+P CLP+ +DVGT+ +L+DP Y GLR
Sbjct: 195 LGLGDLGTYGIGIPVGKLALYVALAGIRPEWCLPVILDVGTDNSELLNDPFYTGLR 250
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +1
Query: 88 GLDHLKHPGLNKGMAFTIEERQSWGSTG 171
G+D LK PGLNKGMAF++ ERQ G G
Sbjct: 51 GIDLLKSPGLNKGMAFSLHERQYLGVHG 78
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 123 GYGFYHRRASVLGIHGLLPPRVKTQEEQ 206
G F LG+HGLLPP T+E+Q
Sbjct: 63 GMAFSLHERQYLGVHGLLPPAFMTEEQQ 90
>Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical
protein R07B7.11 protein.
Length = 451
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 16 YSEMERDRIGLWGSGDGQPTSGLSGLDHLKHP-GLNKGMAFTIEERQSWGSTGCYHHE 186
+SEMERD G+ + + SG+ L H GL G+ + G G Y HE
Sbjct: 79 WSEMERDSHGILVANKTRFPSGMKALAKYMHDRGLKFGIYEDYGTKTCGGYPGSYKHE 136
>Z46996-2|CAA87102.1| 679|Caenorhabditis elegans Hypothetical
protein C34C12.2 protein.
Length = 679
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 557 PTGMPIPHAPKSPRPRNVLRRLQQWRGRPSPASS-*EHRIHVPYRG 423
P P +A SP N LRR +W+G+ A S + R V +RG
Sbjct: 586 PIAQPARYAIPSPGALNALRRPPEWKGQRRHAPSYVKSRESVTFRG 631
>AC024810-5|AAF60763.1| 507|Caenorhabditis elegans Hypothetical
protein Y54E10A.6 protein.
Length = 507
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 400 SAVHKAELLTGQANRRSVHNWHHFSHVIRDETVEQMLIAVQE 275
S + AEL ++ R +V H + H+++DE + L+ Q+
Sbjct: 381 SLLRDAELARKRSKRSTVDPLHKYLHIVKDENILACLVDSQQ 422
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 258 TSILWGSWTAMSICSTVS 311
TS +WG W A S C TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 258 TSILWGSWTAMSICSTVS 311
TS +WG W A S C TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 258 TSILWGSWTAMSICSTVS 311
TS +WG W A S C TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 258 TSILWGSWTAMSICSTVS 311
TS +WG W A S C TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical
protein F17B5.3 protein.
Length = 239
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 453 RTSYTCPLSWIVMKRPLGR 397
R + TCP WI +RP GR
Sbjct: 66 RPTRTCPRDWITFERPQGR 84
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 521 ATWAHAGWASLWANSRSTPRSEASSRISVCPSLSTWVRTPS 643
A A+A A+ A + + P S + C SL TWV TP+
Sbjct: 926 AAAANAQQAAAAAAAAANPLSALVAATGACFSLDTWVTTPT 966
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical protein
R08B4.1a protein.
Length = 1137
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 521 ATWAHAGWASLWANSRSTPRSEASSRISVCPSLSTWVRTPS 643
A A+A A+ A + + P S + C SL TWV TP+
Sbjct: 903 AAAANAQQAAAAAAAAANPLSALVAATGACFSLDTWVTTPT 943
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 521 ATWAHAGWASLWANSRSTPRSEASSRISVCPSLSTWVRTPS 643
A A+A A+ A + + P S + C SL TWV TP+
Sbjct: 556 AAAANAQQAAAAAAAAANPLSALVAATGACFSLDTWVTTPT 596
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 170 PVDPQD*RSSMVKAIPLLRPGCLRWSRPERPLVGCPSPEPHNPIRS 33
P P+ R+ ++ P RP S RP PSPEP NP R+
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRT 186
>U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidance
abnormal protein10 protein.
Length = 419
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 522 AQTQKRSPSVTTMARTSVSGQFLRTSYTCPLSWIVMKRPLGRR 394
A + K SP+ TT T+V Q + T P+S + ++P ++
Sbjct: 60 ASSPKTSPAKTTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQK 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,079,924
Number of Sequences: 27780
Number of extensions: 439925
Number of successful extensions: 1428
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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