Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0676
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)         113   2e-25
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)               49   5e-06
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            46   2e-05
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             37   0.015
SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)              33   0.25 
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               32   0.43 
SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_2468| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)                29   5.3  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               29   5.3  
SB_58076| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06)                  28   7.0  
SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_10143| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score =  113 bits (271), Expect = 2e-25
 Identities = 52/72 (72%), Positives = 64/72 (88%)
 Frame = +3

Query: 531 ETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAGVIGLELGSV 710
           E + TKNILIA+GSEVTPFPG+  DEK II+STGALSL +VPK +++IGAGVIG+ELGSV
Sbjct: 70  EVIKTKNILIATGSEVTPFPGIEIDEKHIISSTGALSLSTVPKNLVLIGAGVIGVELGSV 129

Query: 711 YQRLGADVTAIE 746
           + RLGA+VTA+E
Sbjct: 130 WSRLGANVTAVE 141



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 29/52 (55%), Positives = 36/52 (69%)
 Frame = +2

Query: 107 LVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLEVL 262
           + R     ++   + DLVVIGSGPGGYVAAIKAAQLGMKV   + D + EV+
Sbjct: 21  ITRQKVLHFSLLGEVDLVVIGSGPGGYVAAIKAAQLGMKVTVYKDDLSTEVI 72


>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
          Length = 394

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 29/73 (39%), Positives = 42/73 (57%)
 Frame = +3

Query: 525 GVETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAGVIGLELG 704
           G +  + K+ILIA+G  V   P +   E  I TS G   LE +PKK+ V+GAG I +EL 
Sbjct: 118 GDQLFSGKHILIATGG-VPSLPSIPGFEHGI-TSDGFFELEDLPKKVAVVGAGYIAVELA 175

Query: 705 SVYQRLGADVTAI 743
            +   LG+ V+ +
Sbjct: 176 GILNALGSRVSLL 188



 Score = 35.9 bits (79), Expect = 0.035
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 104 SLVRIATR-QYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVE 238
           S +RI+ R   A     D VVIG G GG  +A +AA+ G+K V +E
Sbjct: 35  SQMRISLRLMMAAVKAYDYVVIGGGSGGIASARRAAEFGVKAVVIE 80



 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 256 GTCLNVGCIPSKALLHNSHLYHMAKH-DFKQRG-IETGEVTFDFKKMM 393
           GTC+NVGC+P KA     H+  +A H  F   G ++ G+  F  K ++
Sbjct: 86  GTCVNVGCVPKKA-----HVDFVAGHAQFTPDGNVKVGDQLFSGKHIL 128


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = +2

Query: 152 DLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTL 253
           D+++IG GPGGY AAI+A QLG+KV  +E   TL
Sbjct: 259 DVLIIGGGPGGYNAAIRAGQLGLKVACIEGRETL 292



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +1

Query: 256 GTCLNVGCIPSKALLHNSHLYHMA 327
           GTCLNVGC+PSKALLH S LY  A
Sbjct: 294 GTCLNVGCMPSKALLHASELYEAA 317


>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 519 EKGVETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAGVIGLE 698
           ++G ET+ T    + +      +P +   ++  ITS    SL   P   ++IGA  + LE
Sbjct: 724 KRGTETIMTAETFVLAMGLRPRYPNIPGAKEYGITSDDLFSLPYCPGTTVLIGASYVSLE 783

Query: 699 LGSVYQRLGADVTAI 743
                  +G DVT +
Sbjct: 784 CAGFLAAMGLDVTVV 798


>SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)
          Length = 284

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/29 (51%), Positives = 23/29 (79%)
 Frame = +2

Query: 155 LVVIGSGPGGYVAAIKAAQLGMKVVSVEK 241
           ++VIGSGP G  +A++AA LG +V+ +EK
Sbjct: 63  VLVIGSGPCGLRSALEAALLGAQVMVIEK 91


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 137 TTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEK 241
           T     ++VIG+GP G   AI+ A LG +VV VEK
Sbjct: 551 TCEHLQVLVIGAGPIGLRTAIEMALLGAQVVVVEK 585



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 660 KMLVIGAGVIGLELGSVYQRLGADVTAIE 746
           ++LVIGAG IGL        LGA V  +E
Sbjct: 556 QVLVIGAGPIGLRTAIEMALLGAQVVVVE 584


>SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 146 DADLVVIGSGPGGYVAAIKAAQL 214
           +AD+V++G GP G  A+IK  QL
Sbjct: 7   EADVVIVGGGPAGLSASIKLKQL 29


>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 146 DADLVVIGSGPGGYVAAIKAAQLGMKVVSVEK 241
           + D VVIGSG GG   A   A+ G K++ +E+
Sbjct: 85  EVDAVVIGSGIGGMTCASLLAKTGKKILVLEQ 116


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 258 TSKVGSFSTETTFMPSWAALIAATYPPGPEPITT 157
           TS   S + + T  P++A  IA T PP P+P TT
Sbjct: 856 TSTESSTTAQPTQPPTFAPSIAPTQPPTPKPPTT 889


>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 654 PKKMLVIGAGVIGLELGSVYQRLGADVTAIE 746
           P KMLVIG GV GL   +  + +GA V A +
Sbjct: 158 PAKMLVIGGGVAGLSAMAHAKNMGAIVRAFD 188


>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 660 KMLVIGAGVIGLELGSVYQRLGADVTAIE 746
           K++++G+G+ GL      Q  G DVT +E
Sbjct: 252 KVIIVGSGIAGLMAARQLQSFGIDVTMVE 280


>SB_2468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -1

Query: 350 PLCLKSCLAIW*RCELCSKAFDGIHPTLRQVPLK*GPFLLRPP 222
           P C      +W  C   S AFD  H T  +  L  G  L +PP
Sbjct: 184 PFCFSCHPPLWDLCAQLSTAFDRRHDTQDKQTLIFGKLLAKPP 226


>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
          Length = 510

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 495 GNYSSYTFDKINLVLLKEHCNTSC-EAFNSISFIFHHLFE 379
           G  ++Y   ++NL+ L+EH      EAFN   F +H L E
Sbjct: 390 GQATAYMVGQLNLMRLREHARQQLGEAFNLKDFHYHLLKE 429


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = -3

Query: 276 SNIETSTSKVGSFSTETTFMPSWAALIAATYPPGPEPITTRSASCVVAYCLVA 118
           S I ++  +  S     +F PS A     T PP P    T S S VVA  LVA
Sbjct: 143 SPIVSAPVEPSSVVASISFKPSAAGASVPTAPPVPVVSATFSPSVVVASALVA 195


>SB_58076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 225 TFMPSWAALIAATYPPG-PEPITTRSASCVVAYCL 124
           T +P+W AL  A YP G P   T R AS  +A  L
Sbjct: 19  TLIPTWRALNDAPYPVGDPLESTCRHASLALAVVL 53


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 11  RILYFNPKIQKKLLNMGYKFLKLASPTFRSGSLVRIATRQYATTHDADLVVIGSGPGGYV 190
           RILY NPK +   L+M    ++   P+F S S+  I      T  D  L ++ +   G  
Sbjct: 217 RILYVNPKNKVVSLSMLDSIIQFKLPSFESCSIGDIFDNVTITRGDQGLGLLANVKDGLN 276

Query: 191 AAIKAAQLGMKVV 229
             +  +Q+  K +
Sbjct: 277 GFVHFSQVSDKQI 289


>SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06)
          Length = 229

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +2

Query: 170 SGPGGYVAAI---KAAQL---GMKVVSVEKDPTLEVLVSMLDVYHQKLYCTTHIFTIW 325
           SGPGG +A +   K  +L   GM VV       ++ +   LDV    + C T + +IW
Sbjct: 106 SGPGGQIAVLPHNKPCRLPDSGMPVVQCGST-VMDFVFDPLDVNRMAVACETGVISIW 162


>SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 265 LNVGCIPSKALLHNSHLYHMAKHDFKQRGIETGEVTFDFKKMMEY 399
           L   C+P   ++  ++ + +AKHD         E TF F K+M +
Sbjct: 124 LQSACVPDHYIVQKNYRFFLAKHDGSLHFAR--EATFAFYKIMSF 166


>SB_10143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 196 SCYVSTRARTDNNKICIMCGSILS 125
           S Y STR  TD+N + ++ G+ILS
Sbjct: 43  SIYYSTRKYTDSNGLIVVVGTILS 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,210,798
Number of Sequences: 59808
Number of extensions: 492326
Number of successful extensions: 1384
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)