Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0676
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -2

Query: 181  TRARTDNNKICIMCGSILSCSNSY*TSTSKGRRGKF 74
            T+ +  ++KIC     ++SC++      +K +  KF
Sbjct: 1692 TQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKF 1727


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 709 TEPSSKPITPAP 674
           T PSS P++P P
Sbjct: 436 TPPSSNPVSPVP 447


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 609 KQIITSTGALSLESVPKKMLVIGAGVIG 692
           +Q+  +   L L+++    +V+G G+IG
Sbjct: 809 EQLEKAPNTLGLKNMAGVFIVVGVGIIG 836


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 494 ATIVPTPLTRLTLFF*KSIAIPPVRPLTALALY 396
           A +V + LT +T+F      IPPV  + AL ++
Sbjct: 233 ALLVTSMLTLVTMFTGLKSDIPPVAYVKALDVW 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,850
Number of Sequences: 438
Number of extensions: 4836
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)