Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0672
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25823 Cluster: Clp (C?) protein; n=24; Plasmodium|Rep:...    35   1.6  
UniRef50_A0D3H7 Cluster: Chromosome undetermined scaffold_36, wh...    35   2.1  
UniRef50_Q33575 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    34   3.6  
UniRef50_Q7RN75 Cluster: Putative uncharacterized protein PY0194...    33   4.8  
UniRef50_Q14KE0 Cluster: Plectrovirus svts2 orf 2 transmembrane ...    33   6.3  
UniRef50_A6CJK5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.3  

>UniRef50_Q25823 Cluster: Clp (C?) protein; n=24; Plasmodium|Rep:
           Clp (C?) protein - Plasmodium falciparum
          Length = 766

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
 Frame = -3

Query: 621 LSYNRSI*RFEVKLLLFNTYEYNI*L*VYITLRICHRV-KVLICLRKFKSKLCYIECTIL 445
           L  N+ I   ++ L L N Y+YN      I +   ++V  +LI L  F  K+      +L
Sbjct: 52  LKINKKIINNKIILSLLNKYKYNNKN--IININFSNKVINILIKLNNFNFKINSFNLLLL 109

Query: 444 C---E*SNSDIVTFFKFIMLNFHMTALSTLNIH*YLVYSTNINQ*VLM*CYMKFLQITLN 274
               + +N DI   FK++ LNF     S LN++ Y+   TNI        +   ++I L 
Sbjct: 110 LLEEKNNNKDINYLFKYLNLNF-----SNLNLNNYI--KTNI--------FSNNIRIKLK 154

Query: 273 AKNVKIPNIQYTYMN 229
             +V + N+ Y Y N
Sbjct: 155 EISVNLLNLNYIYNN 169


>UniRef50_A0D3H7 Cluster: Chromosome undetermined scaffold_36, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_36,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 648

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +1

Query: 235 ICILDIGYFNVLCIKCNLQKLHVTSH*NLLINVRTIY*ILMYI*RAKRCHMEIQHNKFKE 414
           +C  D+GYF   C +  L+ +HV S+    I    I  I++ I  AK+ H+ ++ NK  +
Sbjct: 23  VCECDLGYFGTECSQ-KLEDIHVVSY-YAFIGFFLILFIVLLILTAKQLHLSVKTNKIPQ 80


>UniRef50_Q33575 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=3; Trypanosomatidae|Rep: NADH-ubiquinone
           oxidoreductase chain 4 - Trypanosoma brucei
          Length = 437

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = -1

Query: 596 VLKLNY----FYLIHTSIIYSFKFI*HYEFAIELKFSYVYVNLRVNYATSNVRFFV 441
           +LKLN     F L+  +IIY +    +Y F I ++ +YVYVN+ +NY +    FF+
Sbjct: 1   MLKLNLICINFILLIVTIIYIYI---NYSFCIGIEINYVYVNIYLNYISLWFVFFM 53


>UniRef50_Q7RN75 Cluster: Putative uncharacterized protein PY01947;
           n=7; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY01947 - Plasmodium yoelii yoelii
          Length = 2095

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
 Frame = +2

Query: 185 NQFDLKRRLRRYKIKFIYVYWILGILTFFALSVICKNFM*HHIKTY*LMFVLYT--KY*C 358
           N+F   ++    +I F ++ ++LGI T F + +    F+ H I  + + F+  T   Y  
Sbjct: 10  NRFSFSKKKNWARINFTFLVFVLGIKTLFCILL----FLYHQIVLFFIFFISTTISLYAL 65

Query: 359 IFNVLSAVIWKFNIINLKKVTMSLLLYSQRIVH 457
           + N  +++I    I+ L  +  S+ L S  IVH
Sbjct: 66  VINTFTSLI--LYIVVLFSILSSIGLSSLGIVH 96


>UniRef50_Q14KE0 Cluster: Plectrovirus svts2 orf 2 transmembrane
           protein; n=8; root|Rep: Plectrovirus svts2 orf 2
           transmembrane protein - Spiroplasma citri
          Length = 336

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 16/72 (22%), Positives = 36/72 (50%)
 Frame = +2

Query: 179 FQNQFDLKRRLRRYKIKFIYVYWILGILTFFALSVICKNFM*HHIKTY*LMFVLYTKY*C 358
           F+N F L +R +  K  + YV W +  + F+   ++C N    +  +  ++ +++  +  
Sbjct: 2   FKNYFKLFKRQKNIKFSYWYVNWFMANILFY-FFIVCFNLQFIYFSSTSVIDIIFFIFLV 60

Query: 359 IFNVLSAVIWKF 394
           IF+++    W F
Sbjct: 61  IFDII--FFWSF 70


>UniRef50_A6CJK5 Cluster: Putative uncharacterized protein; n=1;
           Bacillus sp. SG-1|Rep: Putative uncharacterized protein
           - Bacillus sp. SG-1
          Length = 710

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 605 VYDVLKLNYFYLIHTSIIYSFKFI*HYEFAIELKFSYVYVNLR 477
           +Y  L ++YF LI  ++I+  K   HYEF + L F ++++  +
Sbjct: 464 LYIFLNISYFILITAAVIFFKKKNSHYEFTLALIFWFLFIGYK 506


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,546,585
Number of Sequences: 1657284
Number of extensions: 8939767
Number of successful extensions: 15985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15975
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)