Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0672
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    27   1.9  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    26   4.3  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    26   4.3  
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.9  

>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/50 (24%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -1

Query: 569 IHTSIIYSFKFI*-HYEFAIELKFSYVYVNLRVNYATSNVRFFVNKVTVT 423
           I T++++++ F+  H++   EL+ +  YV+L +++  + V  F+ K  ++
Sbjct: 375 IPTTLLWTYYFLAQHFDHVGELEKAEKYVDLAIDHTPTLVELFMTKARIS 424


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 253 GYFNVLCIKCNLQKLHVTSH*NLLINVRTIY*ILMYI 363
           G F   CI     KLH T+   + + +  ++ I+M+I
Sbjct: 158 GIFIAACINMGTHKLHKTAQWRVSMGINLLWGIIMFI 194


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +2

Query: 572 NKSNLTSKRHILLLYDKFI---PLMLNFKLINV 661
           NK +   KRH++ LYD+F+    L L F+L+++
Sbjct: 183 NKYDPEDKRHLIRLYDQFMHKNHLCLVFELLSI 215


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 540 VYITLRICHRVKVLICLRKFKSKLCYIECTILCE*SNSDIVTF 412
           VYI LR C   K     RK +S  C I    +   +N D+V F
Sbjct: 16  VYILLRKCVIYKFAYSSRKIESVHCAITDDEVMSYNNEDMVPF 58


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 519 CHRVKVLICLRKFKSKLCYIECTI 448
           C R++    L+KF ++ CY+ C+I
Sbjct: 901 CSRLEFRKYLQKFNNETCYMICSI 924


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,868
Number of Sequences: 5004
Number of extensions: 44607
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)