Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0672
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm recep...    29   3.0  
AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical ...    29   4.0  

>U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm receptor
           protein 139 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 248 ILGILTFFALSVICKNFM*HHIKTY*LMFVLYTKY*CIFNVLSAVIWKFNIINLKKVTMS 427
           +L    F+   V+C+    HHIK Y L F+       +  V+   +W  N+    K T+ 
Sbjct: 103 LLATQFFYRYIVVCRPQFLHHIKGYKLCFIF------LPGVVIFFLWYLNVHFGMKKTLE 156

Query: 428 LLLYSQRIV 454
              +SQ ++
Sbjct: 157 KAKFSQEVI 165


>AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical
           protein F28B3.5b protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 260 LTFFALSVICKNFM*HHIKTY*LMFVLYTKY*CIFNVLSAVIWKFNIIN 406
           L+ F LSV+   FM +++K Y   F + TK+   FN+   +   +N IN
Sbjct: 10  LSQFGLSVLQTLFMFYYVKVYINQFHVNTKW---FNIAQTLFMVWNAIN 55


>AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical
           protein F28B3.5a protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 260 LTFFALSVICKNFM*HHIKTY*LMFVLYTKY*CIFNVLSAVIWKFNIIN 406
           L+ F LSV+   FM +++K Y   F + TK+   FN+   +   +N IN
Sbjct: 10  LSQFGLSVLQTLFMFYYVKVYINQFHVNTKW---FNIAQTLFMVWNAIN 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,538,910
Number of Sequences: 27780
Number of extensions: 230014
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)