Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0672
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    31   0.70 
At1g27490.1 68414.m03351 hypothetical protein similar to MYB tra...    28   4.9  

>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -1

Query: 593 LKLNYFYLIHTSI---IYSFKFI*HYEFAIELKFSYVYVNLRVNYA 465
           L L+ FY+I   I   +   KF    +F+++  F +VY+NL+++ A
Sbjct: 408 LALSTFYIIFLMIFGSVIGLKFFLLNDFSLQFSFYFVYINLQISIA 453


>At1g27490.1 68414.m03351 hypothetical protein similar to MYB
           transcription factor isolog (AC002335)
          Length = 164

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 284 LHLMQRTLKYPISNIHI 234
           LHL++ TLK+P+ N+H+
Sbjct: 41  LHLLRSTLKFPLLNLHL 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,776
Number of Sequences: 28952
Number of extensions: 189962
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)