Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0669
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 28 1.1
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 27 2.6
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.6
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 27 3.5
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 4.6
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 4.6
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 26 4.6
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 4.6
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 26 6.0
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 26 6.0
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 6.0
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 686 STQHGKHGKGSTTQKSLGSSALEHQLGYEKKNIAHNN 576
S H K S T K++ + L EKK++ HNN
Sbjct: 126 SNNISSHEKSSKTTKNVSPGVMTSDLIPEKKSVKHNN 162
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 671 KHGKGSTTQKSLGSSALEHQLGYEKKNIAHNNML 570
K+G+ S L S+ LE +L +K AH+N L
Sbjct: 566 KYGEMSDNALRLASAKLERRLQIDKSKAAHDNAL 599
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 489 IF*VIKISYVSSFKI*GIPGFWQC 560
IF + SYVSS K+ GIPG C
Sbjct: 12 IFFLCSFSYVSSIKLCGIPGAPAC 35
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 15 KRASWLKYL-EQSKLSAPESLVWCWHSEVRW 104
K++ WL+ L + SKLS E+LV HS V W
Sbjct: 126 KKSGWLQGLRDPSKLSKKETLV-AHHSSVLW 155
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 188 FKECGVINVKISNGSP 235
FK+CGVI I NG+P
Sbjct: 130 FKKCGVIAKNIDNGTP 145
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 75 LSSQEQITSTVPDILANSLSSYVFN 1
L+ + T+T PDIL +SL Y++N
Sbjct: 542 LTITPRATTTTPDILIHSLCVYLYN 566
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 120 YRYSNQSCCSETENSAWKSVNG 185
Y Y+++ ++TEN+ KS+NG
Sbjct: 93 YLYNSEDLSNDTENNETKSING 114
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 235 RATIGNLDIDHSALLKVPFTDFHAEFSVSLQQLWLEYRYKKD 110
R +GN + + + L PFT ++ + +++ + EY KD
Sbjct: 444 RRLVGNTNFEEAYLSLNPFTKTYSSYRITIFNYFREYPGSKD 485
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 24 SWLKYLEQSKLSAPESLVWCWHSEVRW 104
+W+K+ + K +PE+L W +V W
Sbjct: 338 TWMKHKFKLKTISPETLNWLKECDVTW 364
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 503 YDLKDLQESWGNNFNIDKDNNQLISNFTLK 414
Y + +L E W N+F+I+K + +S T++
Sbjct: 230 YRVSNLNEIWCNSFSIEKSLHDTLSQRTVE 259
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = -1
Query: 554 PKTRNALYFKRAYIRYFYDLKDLQES 477
P+ +L+ +R+Y+R F+D+ D++ES
Sbjct: 58 PRRSRSLHKERSYMRKFFDM-DMEES 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,739
Number of Sequences: 5004
Number of extensions: 65955
Number of successful extensions: 208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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