Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0669
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13...    29   4.8  

>11_01_0017 -
           129261-129335,129352-129426,129565-129645,129929-130040,
           130131-131177,131256-131347,131773-131943,132150-132253,
           132367-132501,132583-132724,132803-133059,133126-133337,
           133417-133454
          Length = 846

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -3

Query: 177 QISMLNSPFHCSN----FGWNTGIKKTPPTEPRYANTTLSSQEQITSTV-PDI 34
           Q +ML    HC++    F  +TGIK +       +NT+L S+ Q+TS+  PDI
Sbjct: 574 QQNMLVQSVHCTDQMPQFDSSTGIKPSLAYSQLDSNTSLCSEVQLTSSEGPDI 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,820,901
Number of Sequences: 37544
Number of extensions: 386706
Number of successful extensions: 966
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)