Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0669
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_615| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013) 30 1.6
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 30 1.6
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 29 2.8
SB_32215| Best HMM Match : FtsX (HMM E-Value=0.29) 29 2.8
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_8618| Best HMM Match : zf-C2H2 (HMM E-Value=5.7) 29 4.9
SB_8435| Best HMM Match : PX (HMM E-Value=2.8) 29 4.9
SB_58184| Best HMM Match : DUF1545 (HMM E-Value=3.6) 29 4.9
SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48) 29 4.9
SB_51909| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 28 6.4
SB_50758| Best HMM Match : DUF1545 (HMM E-Value=3.6) 28 6.4
SB_31559| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 28 6.4
SB_4537| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 28 6.4
SB_11739| Best HMM Match : DUF1545 (HMM E-Value=3.6) 28 6.4
SB_48360| Best HMM Match : EGF (HMM E-Value=0.1) 28 8.5
SB_36633| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_33256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32) 28 8.5
>SB_615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + RN+ + K Q S V ++ S T A
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--AARNQMEKEKGQRHSSNGVPSFDMSCTFAEQFTAWL 112
Query: 243 KLTG 232
K +G
Sbjct: 113 KSSG 116
>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
Length = 1105
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 117 KKTPPTEPRYANTTLSS--QEQITSTVPDILANSL 19
K PPT A++TL + IT TVP ILAN L
Sbjct: 250 KSAPPTTAVVASSTLHKLIEASITKTVPTILANML 284
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 117 KKTPPTEPRYANTTLSS--QEQITSTVPDILANSL 19
K PPT A++TL + IT TVP ILAN L
Sbjct: 113 KSAPPTTAVVASSTLHKLIEASITKTVPTILANML 147
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 217 LDIDHSALLKVPFTDFHAEFSVSLQQLWLEYRYKKDAAHRTSLCQHHTKLSGAD 56
L+ DH LLK+ +H+ V LQ + +K A L H T+ G D
Sbjct: 1324 LEFDHKNLLKIHMDCYHSNMEV-LQCYYCGASFKHRAEFLDHLTSHETETKGMD 1376
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 150 HCSNFGWNTGIKKTPPTEPRYANTTLSSQEQITSTVPDILANSLSSY 10
H + GW TG+ PP Y+ TL++ I +T ++ + Y
Sbjct: 390 HWNQEGWKTGLCSVPPVGQPYSLLTLANNSCIKNTFVELKDRFMKLY 436
>SB_32215| Best HMM Match : FtsX (HMM E-Value=0.29)
Length = 237
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + R++ + K Q S V ++ S T A
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--ASRSQMEKEKGQRRSSNGVPSFDMSCTFAEQFTAET 112
Query: 243 KLTGLPL-EILTLITPHSLKFHLQISMLNS 157
K G + E + IT + + IS++ +
Sbjct: 113 KGRGTKIWETIITITIPIIAITIIISIITT 142
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 518 YIRYFYDLKDLQESWGNNFNIDKDNNQLISNFT-LKNNILCFSSSKHLMKRLILRKSVSE 342
Y+R ++D+ SW NF I K N Q+ S + + + L L+ R++L +V+E
Sbjct: 3496 YLRVWHDMTGYDSSWFLNFAIIK-NLQMDSKWIFMCSRWLALEKDDGLVDRVLLVSTVAE 3554
Query: 341 IVHDATKIKT 312
+ + T T
Sbjct: 3555 LKNFKTLFNT 3564
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = -3
Query: 309 SPLLVKAYTESLTSHSGIRAMKKLTGLPLEILTLITPHSLKFHLQISMLNSPFHCSNFGW 130
SPLLV Y++ + + I + +T LPL + HS S L + + N+
Sbjct: 400 SPLLVNHYSQLVNRYPKINSSSPVTRLPLSVTRY--RHSPLLVNHYSQLVNRYPKINY-- 455
Query: 129 NTGIKKTPPTEPRYANTTL--SSQEQITSTVPDILANSL 19
++ + + P + RY +++L + Q+ + P I ++SL
Sbjct: 456 SSLVTRLPLSVSRYCHSSLLVNHYSQLVNRYPKINSSSL 494
>SB_8618| Best HMM Match : zf-C2H2 (HMM E-Value=5.7)
Length = 293
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + R++ + K Q S V ++ S T I A
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--ASRSQMVKEKGQRRSSNGVPSFDMSCTFAEQITAWL 112
Query: 243 KLTG 232
K +G
Sbjct: 113 KGSG 116
>SB_8435| Best HMM Match : PX (HMM E-Value=2.8)
Length = 277
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 405 PLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSP 304
P FFFFKT Y + KK + SR Y + P
Sbjct: 76 PFFFFFKTDYSQFCEKKGTLMRLSRLYDGKSRYP 109
>SB_58184| Best HMM Match : DUF1545 (HMM E-Value=3.6)
Length = 251
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + R++ + K Q S V ++ S T A
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--ASRSQMEKEKGQRRSSSGVPSFDMSCTFAEQFTAWL 112
Query: 243 KLTG 232
K +G
Sbjct: 113 KGSG 116
>SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)
Length = 643
Score = 28.7 bits (61), Expect = 4.9
Identities = 26/119 (21%), Positives = 49/119 (41%)
Frame = -3
Query: 360 KKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMKKLTGLPLEILTLITPHSLKFH 181
KK+ RR + + + AY S S+ I +K+ L TL L+
Sbjct: 510 KKILDIPEERRSQQAEEINEQISAYFRSSASNFNINGIKRDVSSQLW-KTLYDFPELQVC 568
Query: 180 LQISMLNSPFHCSNFGWNTGIKKTPPTEPRYANTTLSSQEQITSTVPDILANSLSSYVF 4
+++ + C + W ++ TPP Y +T S ++ D+ A+++ YV+
Sbjct: 569 MKLQLFIE--ECVDVAWRLSVQ-TPPMVIEYESTVFSGKKHTRFYTSDMEADNIKFYVW 624
>SB_51909| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 575
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + R++ + K Q S V ++ S T A
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--ASRSQMEKEKGQRRSSNGVPSFDMSCTFAEQFTAWL 112
Query: 243 KLTG 232
K +G
Sbjct: 113 KGSG 116
>SB_50758| Best HMM Match : DUF1545 (HMM E-Value=3.6)
Length = 410
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + R++ + K Q S V ++ S T A
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--ASRSQMEKEKGQRRSSNGVPSFDMSCTFAEQFTAWL 112
Query: 243 KLTG 232
K +G
Sbjct: 113 KGSG 116
>SB_31559| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 554
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + R++ + K Q S V ++ S T A
Sbjct: 16 HVKKKHPWFYYFDEKPSDSDIE--ASRSQMEKEKGQRRSSNGVPSFDMSCTFAEQFTAWL 73
Query: 243 KLTG 232
K +G
Sbjct: 74 KGSG 77
>SB_4537| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 593
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + R++ + K Q S V ++ S T A
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--ASRSQMEKEKGQRRSSNGVPSFDMSCTFAEQFTAWL 112
Query: 243 KLTG 232
K +G
Sbjct: 113 KGSG 116
>SB_11739| Best HMM Match : DUF1545 (HMM E-Value=3.6)
Length = 540
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + R++ + K Q S V ++ S T A
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--ASRSQMEKEKGQRRSSNGVPSFDMSCTFAEQFTAWL 112
Query: 243 KLTG 232
K +G
Sbjct: 113 KGSG 116
>SB_48360| Best HMM Match : EGF (HMM E-Value=0.1)
Length = 594
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLTSHSGIRAMK 244
HV+K+HP F++F ++D + R + + K Q S V ++ S T A
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--ASRRQMEKEKGQRRSSNGVPSFDMSCTFAEQFTAWL 112
Query: 243 KLTG 232
K +G
Sbjct: 113 KGSG 116
>SB_36633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 157 SVSLQQLWLEYRYKKDAAHRTSLCQHH---TKLSGADNFDCSRY 35
S ++Q++W E K D HR S + T L+ DNF +RY
Sbjct: 110 SCTVQRVWDELMEKSDFEHRRSAVEEFNRITVLTIFDNFRANRY 153
>SB_33256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 423 HVEKQHPLFFFFKTSYEEADFKKVCVRNRSRRYKDQDFSPLLVKAYTESLT 271
HV+K+HP F++F ++D + R++ + K Q S V ++ S T
Sbjct: 55 HVKKKHPWFYYFDEKPSDSDIE--ASRSKMEKEKGQRRSSNGVPSFDMSCT 103
>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
Length = 1206
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 123 GIKKTPPTEPRYANTTLSSQEQITSTVPDILANSLSSYV 7
G+ P T RY T S Q TS+V ++ S +SYV
Sbjct: 773 GVAGHPQTTGRYCGTFAPSLIQSTSSVVTLIFKSATSYV 811
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,996,717
Number of Sequences: 59808
Number of extensions: 455127
Number of successful extensions: 1172
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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