Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0667
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   8.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.2  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 417 KELHNRPSKQSLCH 376
           + +H RPSK+ +C+
Sbjct: 23  QNVHTRPSKEPICN 36


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 483 SANGLWANQRNTLHWYAPGELSKELH 406
           +ANG    QR +   Y   EL KE H
Sbjct: 3   NANGEVKRQRTSYTRYQTLELEKEFH 28


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 276 GTLIEVQKLEWSDGLFDVTWSG 341
           G + E+QK +W DG     W G
Sbjct: 615 GGISEIQKHKWFDGF---NWEG 633


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 413 SCTTDPPNNHCAIT 372
           SC   P NN C+I+
Sbjct: 162 SCCNSPENNTCSIS 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,049
Number of Sequences: 438
Number of extensions: 4314
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)