Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0667
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 56 3e-08
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 43 2e-04
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 43 2e-04
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 43 2e-04
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 42 5e-04
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 41 7e-04
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 41 9e-04
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 40 0.001
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 38 0.006
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 38 0.008
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 37 0.014
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 37 0.014
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 37 0.014
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 36 0.019
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 36 0.019
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 36 0.025
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 36 0.025
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 36 0.025
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 36 0.025
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 36 0.033
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 36 0.033
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 36 0.033
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 35 0.043
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 35 0.043
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 35 0.043
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 35 0.043
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 35 0.057
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 35 0.057
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 35 0.057
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 35 0.057
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 35 0.057
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 34 0.076
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 34 0.076
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 34 0.10
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 34 0.10
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 33 0.13
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 33 0.13
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 33 0.13
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 33 0.13
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 33 0.13
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 33 0.17
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 33 0.17
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 33 0.17
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 33 0.17
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 33 0.17
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 33 0.17
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 33 0.17
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 32 0.31
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 32 0.31
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 32 0.31
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 32 0.31
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 32 0.31
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 32 0.31
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 32 0.40
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 32 0.40
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 32 0.40
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 32 0.40
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 31 0.53
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 31 0.53
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 31 0.53
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 31 0.53
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 31 0.53
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 31 0.71
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 31 0.71
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 31 0.71
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 31 0.71
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 31 0.71
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 31 0.93
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 31 0.93
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 31 0.93
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 30 1.2
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 30 1.2
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 30 1.2
At1g48540.2 68414.m05428 leucine-rich repeat family protein 30 1.2
At1g48540.1 68414.m05427 leucine-rich repeat family protein 30 1.2
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 30 1.2
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 30 1.2
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 30 1.6
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 30 1.6
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 30 1.6
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 30 1.6
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 29 2.2
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 29 2.2
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 29 2.2
At3g08570.1 68416.m00994 phototropic-responsive protein, putativ... 29 2.2
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 2.2
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 29 2.8
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 29 2.8
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 29 2.8
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 29 2.8
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 29 2.8
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 29 3.8
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 29 3.8
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 28 5.0
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 28 5.0
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 28 5.0
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 28 5.0
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 28 5.0
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 28 5.0
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 28 5.0
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 28 5.0
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 28 5.0
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 28 5.0
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 28 6.6
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 28 6.6
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ... 28 6.6
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea... 28 6.6
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 28 6.6
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 28 6.6
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 28 6.6
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 28 6.6
At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containi... 28 6.6
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 28 6.6
At5g17980.1 68418.m02109 C2 domain-containing protein contains I... 27 8.7
At5g08170.1 68418.m00954 porphyromonas-type peptidyl-arginine de... 27 8.7
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 27 8.7
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 27 8.7
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Frame = +3
Query: 252 LLELAPDGGTLIEVQKLEWSDGLFDVTWSGSSDNTAACGAGDGTVIVWRVGC---AAPLR 422
+LELAP + E + +D ++DV WS S D+ GDG+V ++ + P+R
Sbjct: 41 VLELAPGAPGVTESVSYDTADAVYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIR 100
Query: 423 VLRAHTSEVCSVDW---PRGHLLSASWDTTV 506
+ H EV SVD+ R L++SWD TV
Sbjct: 101 SFQEHAREVQSVDYNPTRRDSFLTSSWDDTV 131
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
+LW + + TF H+ VY AV++P FAS SGD L++W E
Sbjct: 132 KLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVRE 181
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRGH---LLSA 488
++ W+ + A +GD T+ +W V ++ AH E+ S DW + L ++
Sbjct: 152 VYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIPAHDFEILSCDWNKYDDCILATS 211
Query: 489 SWDTTV 506
S D TV
Sbjct: 212 SVDKTV 217
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 QLWDPES-ETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++WD S L+ GH V FSPH + AS S D + LW
Sbjct: 218 KVWDVRSYRVPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDMSVCLW 264
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 130 MPTFLTPGRHGYSVRFSRTRPDALAVATSQYY 225
MP F P +GYSV+FS LAVAT+Q +
Sbjct: 1 MPVFKAPF-NGYSVKFSPFYESRLAVATAQNF 31
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 QLWDPESE-TCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E+ C F GHS V VF+P TFAS S D +K+W
Sbjct: 124 KLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIW 170
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 497 YNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+ ++WD ++++C+ T GH+ V F P P S DG +++W
Sbjct: 209 HTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG-SEDGTVRIW 256
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRG----HLLS 485
+ V ++ NT A + D T+ +W +G P L AH V VD+ G +L++
Sbjct: 145 VMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204
Query: 486 ASWDTT 503
S D T
Sbjct: 205 GSDDHT 210
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 QLWDPESE-TCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E+ C F GHS V VF+P TFAS S D +K+W
Sbjct: 124 KLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIW 170
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 497 YNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+ ++WD ++++C+ T GH+ V F P P S DG +++W
Sbjct: 209 HTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG-SEDGTVRIW 256
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRG----HLLS 485
+ V ++ NT A + D T+ +W +G P L AH V VD+ G +L++
Sbjct: 145 VMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204
Query: 486 ASWDTT 503
S D T
Sbjct: 205 GSDDHT 210
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 QLWDPESE-TCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E+ C F GHS V VF+P TFAS S D +K+W
Sbjct: 124 KLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIW 170
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 497 YNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+ ++WD ++++C+ T GH+ V F P P S DG +++W
Sbjct: 209 HTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG-SEDGTVRIW 256
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRG----HLLS 485
+ V ++ NT A + D T+ +W +G P L AH V VD+ G +L++
Sbjct: 145 VMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204
Query: 486 ASWDTT 503
S D T
Sbjct: 205 GSDDHT 210
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
Q+WD + S +T H + ++ FSP P F S S D +KLW+ +E
Sbjct: 791 QIWDAGTGQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKLWSINE 840
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 QLWDPESE-TCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E C F GHS V F+P TFAS S D +K+W
Sbjct: 124 KLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 497 YNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+ ++WD ++++C+ T GH+ V F P P S DG +++W
Sbjct: 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG-SEDGTVRIW 256
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRG----HLLS 485
+ VT++ NT A + D T+ +W +G P L AH V VD+ G +L++
Sbjct: 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204
Query: 486 ASWDTT 503
S D T
Sbjct: 205 GSDDHT 210
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 QLWDPESE-TCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E C F GHS V F+P TFAS S D +K+W
Sbjct: 124 KLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 497 YNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+ ++WD ++++C+ T GH+ V F P P S DG +++W
Sbjct: 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITG-SEDGTVRIW 256
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRG----HLLS 485
+ VT++ NT A + D T+ +W +G P L AH V VD+ G +L++
Sbjct: 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLIT 204
Query: 486 ASWDTT 503
S D T
Sbjct: 205 GSDDHT 210
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWA 646
+LW+ S++C+ TGH+ + F+ S + F S SGD LK+W+
Sbjct: 429 RLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWS 475
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSES 658
++W +CL TF GH+ V A F F S DG LKLW + S
Sbjct: 566 KIWAISDGSCLKTFEGHTSSVLRASFITDG-TQFVSCGADGLLKLWNVNTS 615
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPAT-FASVSGDGHLKLW 643
+WD + C F GH +V + +F P S S S D +++W
Sbjct: 128 VWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVW 173
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEV 449
+F V +S + D +GD TV +W + + L+ HTS V
Sbjct: 544 IFSVEFS-TVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSV 586
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
+LWD E L +F GH + VY+ FSP+ AS S D + +W+ E
Sbjct: 524 KLWDAELGKMLCSFNGHREPVYSLAFSPNG-EYIASGSLDKSIHIWSIKE 572
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Frame = +3
Query: 327 VTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRG---------- 473
V W + A+C + D T +W + + + LR HT E+ ++ W P G
Sbjct: 454 VKWDPTGSLLASC-SDDSTAKIWNIKQSTFVHDLREHTKEIYTIRWSPTGPGTNNPNKQL 512
Query: 474 HLLSASWDTTV 506
L SAS+D+TV
Sbjct: 513 TLASASFDSTV 523
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 417 LRVLRAHTSEVCSVDW-PRGHLL-SASWDTT 503
+R+L HTSEVC+ W P LL S S D T
Sbjct: 258 VRILEGHTSEVCACAWSPSASLLASGSGDAT 288
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPA--------TFASVSGDGHLKLW 643
++W+ + T + H++ +YT +SP P T AS S D +KLW
Sbjct: 473 KIWNIKQSTFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLASASFDSTVKLW 526
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
+LWD E++TCL F H+ V FSP F S S D +++W+ +
Sbjct: 530 RLWDIETKTCLKLF-AHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQD 578
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWA 646
+LWD S+TCL F+ HS V F+P F S S D +++W+
Sbjct: 492 RLWDLSSKTCLKVFS-HSDYVTCIQFNPVDDNYFISGSLDAKVRIWS 537
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 324 DVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRGHLL-SASWD 497
D+ WS D+ A G+ D TV +W + VLR H S V V W P G + S S D
Sbjct: 123 DLNWS-PDDSMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTWDPIGSFIASQSDD 181
Query: 498 TTV 506
TV
Sbjct: 182 KTV 184
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 291 VQKLEWSDGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-P 467
V + G DV ++ G GTV +W+ APL ++ H V SV + P
Sbjct: 232 VASIRTGKGRTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHP 291
Query: 468 RGHLLSAS 491
GHL++ S
Sbjct: 292 NGHLMATS 299
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 309 SDGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRGHLL- 482
S G+ VT+ +S+ A GA GT+ +W + A +R L H S SVD+ P G
Sbjct: 59 SSGIDSVTFD-ASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA 117
Query: 483 SASWDTTV 506
S S DT +
Sbjct: 118 SGSLDTNL 125
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 476 FAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
FA L N ++WD + C+ T+ GH++ V F+P S D +K+W
Sbjct: 116 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG-RWVVSGGEDNIVKVW 170
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E + T TGH + F P FAS S D +LK+W
Sbjct: 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIW 128
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 309 SDGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRGHLL- 482
S G+ VT+ +S+ A GA GT+ +W + A +R L H S SVD+ P G
Sbjct: 59 SSGIDSVTFD-ASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA 117
Query: 483 SASWDTTV 506
S S DT +
Sbjct: 118 SGSLDTNL 125
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 476 FAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
FA L N ++WD + C+ T+ GH++ V F+P S D +K+W
Sbjct: 116 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG-RWVVSGGEDNIVKVW 170
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E + T TGH + F P FAS S D +LK+W
Sbjct: 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIW 128
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 333 WSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRG--HLLSASWDTT 503
+ G + A G+ D V +W + PL VL H+ V V W P+ L SAS D T
Sbjct: 450 FGGLDSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVNCVSWNPKNPRMLASASDDQT 509
Query: 504 VNFGTPSQ 527
+ P +
Sbjct: 510 IRIWGPGK 517
Score = 34.7 bits (76), Expect = 0.057
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVRP 667
+W+ ++ L +GHS V ++P +P AS S D +++W + +P
Sbjct: 469 IWNLKNTKPLEVLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIWGPGKPNKP 521
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 333 WSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRGHLLSASWDTTVNF 512
W SS + DG +++W + A PL V+ H +V S DW +G ++ V+
Sbjct: 366 WHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLSADWWKG-------ESVVSG 418
Query: 513 GTPSQKRVSA 542
G S R+S+
Sbjct: 419 GADSNLRISS 428
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++W+ +S TC+S TGH+ V A F P S S D +++W
Sbjct: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV-VSASLDQTVRVW 162
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 497 YNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
Y ++W+ ++ CL T GH + T F +P S S D +++W
Sbjct: 73 YKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENP-WIVSASDDQTIRIW 120
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 512 WDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWAC 649
WD ES TF GHS ++T V S S + + S DG ++W C
Sbjct: 186 WDVESGKIKMTFKGHSDYLHTVV-SRSSASQILTGSEDGTARIWDC 230
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 470 RPFAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW-- 643
R A + ++ D E+ CL TGH + + F PH AS S D ++LW
Sbjct: 119 RTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHHSEIVASGSLDLEVRLWNT 178
Query: 644 ACSESVR 664
SE +R
Sbjct: 179 TTSECIR 185
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 324 DVTWSGSSDNTAACGAGDGTVIVW--RVGCAAPLRVLRAHTSEVCSVDWPR 470
D+ WS + +N A + DG+V VW R+G +P +AH ++V + W R
Sbjct: 274 DLQWSPAEENVFASCSVDGSVAVWDIRLG-KSPALSFKAHNADVNVISWNR 323
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 509 LWDPESETCLST---FTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVRPA 670
LW+P S + F GH+ V +SP FAS S DG + +W PA
Sbjct: 250 LWEPASGSWAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPA 306
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 527 ETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACS 652
+ ++ F H + + +S H +T A SGD L +W S
Sbjct: 350 DAVVAHFEYHKHPITSIEWSAHEASTLAVTSGDNQLTIWDLS 391
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++W+ +S TC+S TGH+ V A F P S S D +++W
Sbjct: 118 RIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLV-VSASLDQTVRVW 162
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 497 YNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
Y ++W+ ++ CL T GH + T F H S S D +++W
Sbjct: 73 YKIKVWNYKNHRCLFTLLGHLDYIRTVQFH-HEYPWIVSASDDQTIRIW 120
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
+LW E CL F+ H+ V + F+P F S S DG +++W+ S+
Sbjct: 380 RLWQIGCEDCLGIFS-HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQ 428
Score = 34.7 bits (76), Expect = 0.057
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 309 SDGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW---PRGHL 479
S + D++WS +N + D +V +W++GC L + +H + V SV + H
Sbjct: 356 SGDILDISWS--KNNRLLSASVDNSVRLWQIGCEDCLGIF-SHNNYVTSVQFNPVDDDHF 412
Query: 480 LSASWDTTVNFGTPSQKRV 536
+S S D V + SQ +V
Sbjct: 413 ISGSIDGKVRIWSASQCQV 431
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
+LW E CL F+ H+ V + F+P F S S DG +++W+ S+
Sbjct: 380 RLWQIGCEDCLGIFS-HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQ 428
Score = 34.7 bits (76), Expect = 0.057
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 309 SDGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW---PRGHL 479
S + D++WS +N + D +V +W++GC L + +H + V SV + H
Sbjct: 356 SGDILDISWS--KNNRLLSASVDNSVRLWQIGCEDCLGIF-SHNNYVTSVQFNPVDDDHF 412
Query: 480 LSASWDTTVNFGTPSQKRV 536
+S S D V + SQ +V
Sbjct: 413 ISGSIDGKVRIWSASQCQV 431
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACS 652
+LWD E+++CL F H+ V F+P F S S D +++W S
Sbjct: 543 RLWDIETQSCLKLF-AHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNIS 590
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWA 646
+LW+ S+TCL F+ HS V F+P F S S D +++W+
Sbjct: 537 RLWNLSSQTCLKVFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRVWS 582
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 34.7 bits (76), Expect = 0.057
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Frame = +3
Query: 309 SDGLFDVTWS---GSSDNTAACGAGDGTVIVWRVGCAAPL---RVLRAHTSEVCSVDWP- 467
+D + DV W+ G +T A G+ DG VI+W VG +VL+ + V V W
Sbjct: 210 TDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTVGKEGEQWEGKVLKDFMTPVWRVSWSL 269
Query: 468 RGHLLSAS 491
G+LL+ S
Sbjct: 270 TGNLLAVS 277
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 34.7 bits (76), Expect = 0.057
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 312 DGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPR--GHLLS 485
D + + +S S+ A+ G+ DG + +WR+ +R AH+ V S+ + R LLS
Sbjct: 264 DPVLCIDFSRDSEMLAS-GSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQLLS 322
Query: 486 ASWDTT 503
S+D T
Sbjct: 323 TSFDQT 328
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LW + CL TFT H+ V F+P F S S DG +++W
Sbjct: 346 RLWRVGCDECLRTFT-HNNFVTCVAFNPVDDNYFISGSIDGKVRIW 390
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWP--RGHLLSAS 491
+ D++WS + D TV +WRVGC LR + C P + +S S
Sbjct: 325 ILDLSWS--EKGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGS 382
Query: 492 WDTTVNFGTPSQKRV 536
D V ++ RV
Sbjct: 383 IDGKVRIWDVTRCRV 397
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LW + CL TFT H+ V F+P F S S DG +++W
Sbjct: 346 RLWRVGCDECLRTFT-HNNFVTCVAFNPVDDNYFISGSIDGKVRIW 390
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWP--RGHLLSAS 491
+ D++WS + D TV +WRVGC LR + C P + +S S
Sbjct: 325 ILDLSWS--EKGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGS 382
Query: 492 WDTTVNFGTPSQKRV 536
D V ++ RV
Sbjct: 383 IDGKVRIWDVTRCRV 397
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
+LW + CL F H+ V F+P + FAS S DG ++W SE
Sbjct: 296 RLWRTGCDQCLHVFH-HNNYVTCVEFNPVNKNNFASGSIDGKARIWGLSE 344
Score = 31.1 bits (67), Expect = 0.71
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW---PRGHLLSA 488
+ D+ WS S N + D TV +WR GC L V H + V V++ + + S
Sbjct: 275 VLDLAWSDS--NLLLSASKDKTVRLWRTGCDQCLHVFH-HNNYVTCVEFNPVNKNNFASG 331
Query: 489 SWDTTVNFGTPSQKRVSA 542
S D S++RV A
Sbjct: 332 SIDGKARIWGLSEERVVA 349
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACS 652
+LWD ++ C+ F GH +V + SP AS DG + +W S
Sbjct: 524 RLWDVQTGECVRIFIGHRSMVLSLAMSPDG-RYMASGDEDGTIMMWDLS 571
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVR 664
+WD + C++ GH+ V++ +S + AS S D +KLW + S +
Sbjct: 567 MWDLSTARCITPLMGHNSCVWSLSYSGEG-SLLASGSADCTVKLWDVTSSTK 617
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVRPAAVV 679
+LW + L + GH+ V+ A FSP FAS S D ++W+ + ++P ++
Sbjct: 443 RLWSTKLNANLVCYKGHNYPVWDAQFSPFG-HYFASCSHDRTARIWS-MDRIQPLRIM 498
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 518 PESETCLSTFTGHSQLVYTAVFSPHSPATFA-SVSGDGHLKLWA 646
P + GHS VY+A FSP P F S S D ++LW+
Sbjct: 405 PNGRRSYTLLLGHSGPVYSATFSP--PGDFVLSSSADTTIRLWS 446
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +3
Query: 360 ACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWP-RGHLL-SASWDTTVNFG--TPSQ 527
A G DGT+++W + A + L H S V S+ + G LL S S D TV T S
Sbjct: 557 ASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTSST 616
Query: 528 KRVSARSR 551
K A +
Sbjct: 617 KLTKAEEK 624
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PR-GHLLSAS 491
++D +S A+C + D T +W + PLR++ H S+ VDW P ++ + S
Sbjct: 463 VWDAQFSPFGHYFASC-SHDRTARIWSMDRIQPLRIMAGHLSD---VDWHPNCNYIATGS 518
Query: 492 WDTTV 506
D TV
Sbjct: 519 SDKTV 523
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 476 FAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
FA L N ++WD + C+ T+ GH++ V F+P S D +K+W
Sbjct: 209 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG-RWIVSGGEDNVVKVW 263
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E + T TGH + F P FAS S D +LK+W
Sbjct: 177 KLWDLEEAKVVRTLTGHRSNCVSVNFHPFG-EFFASGSLDTNLKIW 221
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 327 VTWSGSSDNTAACGAGDGTVIVWRVGCAAP-LRVLRAHTSEVCSVDW-PRGHLL-SASWD 497
+ W + G+ DG++ W VG P + + AH + V + W P G+LL S S D
Sbjct: 358 LAWHPCHEEYFVSGSSDGSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCSGSND 417
Query: 498 TTVNF 512
T F
Sbjct: 418 HTTKF 422
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 351 NTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPR-GHLL-SASWD 497
N G+ D TV +W V L+VL AH+ V +VD+ R G L+ S+S+D
Sbjct: 126 NMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYD 176
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E+ + + T GH+ + F+P S S S D +++W
Sbjct: 96 KLWDVETGSLIKTLIGHTNYAFCVNFNPQS-NMIVSGSFDETVRIW 140
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++WD + CL HS V TAV + S S DG ++W
Sbjct: 138 RIWDVTTGKCLKVLPAHSDPV-TAVDFNRDGSLIVSSSYDGLCRIW 182
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGH--SQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LW+ S L T+TGH +Q ++ FS + S S D + +W
Sbjct: 223 RLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMW 270
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 360 ACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRG-HLLSAS 491
A G+GD TV +W + PL + H + V +V W P G HL+S S
Sbjct: 125 ASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGS 170
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW 464
++ V+WS S G+ D T+ +W + + L H EV +VDW
Sbjct: 405 VYQVSWSADS-RLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDW 452
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 509 LWDPE-SETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
LW+P S+ TGH QLV FSP AS S D ++LW
Sbjct: 343 LWEPSVSKQPKKRLTGHQQLVNHVYFSPDG-KWIASASFDKSVRLW 387
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 533 CLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
C T GH++ V FSP AS SGD ++LW
Sbjct: 101 CSQTIAGHAEAVLCVSFSPDG-KQLASGSGDTTVRLW 136
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD +ET L T GH V T +SP S S G + W
Sbjct: 134 RLWDLYTETPLFTCKGHKNWVLTVAWSPDG-KHLVSGSKSGEICCW 178
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 348 DNTAACGA-GDGTVIVWRVGCAAPLRVLRAHTSEVCSVD---WPRGHLLSASWDTTV 506
DN + A + VW V L HT +VC+VD + H++SA++D T+
Sbjct: 284 DNKSVIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTI 340
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 348 DNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW 464
D+ A G+ DG+V VW + + +L+ TS + W
Sbjct: 457 DDYVAAGSADGSVHVWSLSKGNIVSILKEQTSPILCCSW 495
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 500 NRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
N +WD S T TGH+ V S S S + D +KLW
Sbjct: 296 NLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLW 343
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E + FTGH F P AS S D +LK+W
Sbjct: 83 KLWDVEEAKMVRAFTGHRSNCSAVEFHPFG-EFLASGSSDANLKIW 127
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 500 NRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
N ++WD + C+ T+ GHS+ + T F+P S D +K+W
Sbjct: 123 NLKIWDIRKKGCIQTYKGHSRGISTIRFTPDG-RWVVSGGLDNVVKVW 169
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 497 YNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSES 658
Y LW T L + GH+ V + F A S G +KLW E+
Sbjct: 38 YKVNLWAIGKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGAS-SGVIKLWDVEEA 90
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 500 NRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
N ++WD + C+ T+ GH++ + T FSP S D +K+W
Sbjct: 72 NLRVWDTRKKGCIQTYKGHTRGISTIEFSPDG-RWVVSGGLDNVVKVW 118
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD E + FTGH F P AS S D +L++W
Sbjct: 32 KLWDLEESKMVRAFTGHRSNCSAVEFHPFG-EFLASGSSDTNLRVW 76
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
L+D S LST TGHS+ V + F + + S D +++W CSE
Sbjct: 248 LFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVL-TASSDKTVRIWGCSE 295
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 414 PLRVLRAHTSEVCSVDWPR-GHLLSASWDTTV 506
PL R HT EV + W + +LLSAS D TV
Sbjct: 320 PLYEFRGHTGEVLDISWSKDNYLLSASMDKTV 351
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACS 652
+LW S CL F H+ V + F+P + F S S DG +++W S
Sbjct: 352 RLWKVGSNDCLGVFA-HNSYVTSVQFNPVNENYFMSGSIDGKVRIWNIS 399
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW 464
+ D++WS DN + D TV +W+VG L V AH S V SV +
Sbjct: 331 VLDISWS--KDNYLLSASMDKTVRLWKVGSNDCLGVF-AHNSYVTSVQF 376
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +3
Query: 303 EWSDGLFDVTWSGSSDNTAACGAGDGTVIVWR---VGCAAPLRVLRAHTSEVCSVDWPRG 473
E + G+ + SG++ + G DG+++VW G + +LR HT V +
Sbjct: 257 EHNSGINALALSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESVLCLAVVSD 316
Query: 474 HLLSASWDTTVNFGTPSQKRVS 539
L S S D TV S K S
Sbjct: 317 ILCSGSADKTVRLWKCSAKDYS 338
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 494 GYNRQ--LWDPESETCLSTFTG-HSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
GY++ L+D T L F H + + FS HSP FA+ S D +KLW
Sbjct: 559 GYSKDVALYDIGRGTRLQVFANMHQEHINVVKFSNHSPFLFATSSFDKDVKLW 611
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +3
Query: 309 SDGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPR---GHL 479
++ + + W+ N A + D V VW V + HT EV +V W L
Sbjct: 265 TESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEVL 324
Query: 480 LSASWDTTV 506
LS S+D TV
Sbjct: 325 LSGSFDQTV 333
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +3
Query: 309 SDGLFDVTWS---GSSDNTAACGAGDGTVIVWRVGCAAPL---RVLRAHTSEVCSVDWP- 467
+D + DV W+ G +T A G+ DG VI+W +G VL+ + V V W
Sbjct: 210 TDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIGKEGEQWEGTVLKDFKTPVWRVSWSL 269
Query: 468 RGHLLSAS 491
G+LL+ S
Sbjct: 270 TGNLLAVS 277
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +3
Query: 324 DVTWSGSSDNTA--ACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRG----HLL 482
D+T S N A A + D + VWR+ P+ VLR HT V ++ + PR LL
Sbjct: 349 DITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVTAIAFSPRQASVYQLL 408
Query: 483 SASWDTT 503
S+S D T
Sbjct: 409 SSSDDGT 415
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESV 661
+W+ + + TGHS+ Y P +P S DG +W E +
Sbjct: 623 VWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDIWEGI 673
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVRPAAVV 679
++W E+ CL++ GH + S ++ A AS S D +++W + + P +V+
Sbjct: 330 KIWSMETALCLASCRGHEGDITDLAVSSNN-ALVASASNDFVIRVWRLPDGM-PISVL 385
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Frame = +3
Query: 261 LAPDGGTLIEVQKLEWSDG-LFDVTWSGSSDNTAACGAGDGTVIVWRV-GCAAPLRVLRA 434
++ + G + V+ L G + + ++ S N A GA DGTV +W + + P L+
Sbjct: 98 ISSESGEIAHVRDLSKHKGPVRGLEFNVKSPNQLASGADDGTVCIWDLANPSKPSHYLKG 157
Query: 435 ----HTSEVCSVDWPRG--HLLSASW--DTTVNFGTPSQKRVSARSRVIR 560
SE+ S+ W +G H+L+++ TTV + ++K ++ +R
Sbjct: 158 TGSYMQSEISSLSWNKGFQHVLASTSHNGTTVIWDVNNEKIITDLKTTVR 207
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 461 LAQRPFAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKL 640
L+ F + QL LW S + ++ GH+ V SP+ T AS +GD +L+L
Sbjct: 358 LSSHGFTQNQL----TLWKYPSMSKMAELNGHTSRVLFMAQSPNG-CTVASAAGDENLRL 412
Query: 641 W 643
W
Sbjct: 413 W 413
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 461 LAQRPFAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKL 640
L+ F + QL LW S + ++ GH+ V SP+ T AS +GD +L+L
Sbjct: 360 LSSHGFTQNQL----TLWKYPSMSKMAELNGHTSRVLFMAQSPNG-CTVASAAGDENLRL 414
Query: 641 W 643
W
Sbjct: 415 W 415
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 282 LIEVQKLEW-SDGLFDVTWSGSSDNTAACGAGDGTVIVW 395
L EVQKLE +D +++V W+ ++D A + D TV +W
Sbjct: 10 LEEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIW 48
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 366 GAGDGTVIVWR--VGCAAPLRVLRAHTSEVCSVDW-PRGHLLS 485
G+ DG VW + + VLR H SEV SV W G LL+
Sbjct: 66 GSFDGNTCVWENFATDSESVSVLRGHESEVKSVSWNASGSLLA 108
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 551 GHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVR 664
GH+ V+ ++P + AS S D +++W S R
Sbjct: 18 GHTDRVWNVAWNPAADGVIASCSADKTVRIWEQSSLTR 55
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +2
Query: 545 FTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVRPAAVV 679
+ GH V F P S F SV D L LW PA V
Sbjct: 277 YNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKV 321
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +3
Query: 312 DGLFDVTWSGSSDNTAACGAGDGTVIVW--RVGCAAPLRVLRAHTSEVCSVDW-PRGH-- 476
D + DV + SS D +++W R G + ++V +AH +++ VDW P +
Sbjct: 282 DTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNL 341
Query: 477 LLSASWDTTV 506
+L+ S D TV
Sbjct: 342 ILTGSADNTV 351
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 545 FTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWAC 649
F GH V +SP + F S + DG L +W C
Sbjct: 371 FEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDC 405
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LW E L GH+ LVY+ HS S S D H K+W
Sbjct: 214 RLWALSGEVLLE-MVGHTSLVYSV--DAHSSGLIVSASEDRHAKIW 256
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LW E L GH+ LVY+ HS S S D H K+W
Sbjct: 214 RLWALSGEVLLE-MVGHTSLVYSV--DAHSSGLIVSASEDRHAKIW 256
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 506 QLWDPESET-CLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWA 646
++WD +++ L TF GHS +V + F P S D ++ W+
Sbjct: 718 RVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWS 765
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +3
Query: 342 SSDNTAACGAG-DGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRG--HLLSASWDTTVNF 512
SSD AG D ++W P L HT+ + + + L ++S+D TV
Sbjct: 660 SSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRV 719
Query: 513 GTPSQKRVSARS 548
K S R+
Sbjct: 720 WDADNKGYSLRT 731
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKL 640
++D + L GH+ V + VFSP P S S DGH+ +
Sbjct: 184 VFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNM 227
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW----PRGHLLS 485
+ V WS + A CG+ DGT+ V+ V + L L H V S+ + PR L S
Sbjct: 161 VLSVAWSPNGKRLA-CGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPR-VLFS 218
Query: 486 ASWDTTVNFGTPSQKRVSARSRVIRSW 566
S D VN K + SW
Sbjct: 219 GSDDGHVNMHDAEGKTLLGSMSGHTSW 245
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +3
Query: 327 VTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPR---GHLLSASWD 497
+ W+ N A + D V VW V + HT EV +V W LLS S+D
Sbjct: 239 LAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEVLLSGSFD 298
Query: 498 TTV 506
TV
Sbjct: 299 QTV 301
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 506 QLWDPESE--TCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD + +C++T ++ ++ FSP +P A G LKLW
Sbjct: 395 KLWDLSNNEPSCIATHNPNAGGLFFIAFSPDNPFLLAMGGVMGELKLW 442
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 506 QLWDPESETCLSTFTG---HSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
+LW+ E+ C+ F G H V + F P FAS D +K+W+ E
Sbjct: 154 RLWNVETGICILIFAGAGGHRYEVLSVDFHPSDIYRFASCGMDTTIKIWSMKE 206
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +3
Query: 342 SSDNTAACGAGDGTVI-VWRVGCAAPLRVLRAHTSEVCSVDW-PRG----HLLSASWDTT 503
SS+N A + VI VWR+ P+ VLR HT V ++ + PR LLS+S D T
Sbjct: 296 SSNNIFIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGT 355
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/51 (23%), Positives = 21/51 (41%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESV 661
+W+ + + + TGH+ Y P +P S DG +W E +
Sbjct: 570 VWNASDGSLVHSLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWDIWEGI 620
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 333 WSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRGHLLSASWDTTVN 509
WS D A G D ++VW P+ L HT+ V ++ W P L AS T +
Sbjct: 306 WS-HDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLASGGGTAD 364
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVR 664
LW S + ++T TGHS V SP T + +GD L+ W SV+
Sbjct: 412 LWKYPSMSKVATLTGHSMRVLYLATSPDG-QTIVTGAGDETLRFWNVFPSVK 462
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +2
Query: 545 FTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVRPAAVV 679
+ GH V FSP S F SV D L LW P V
Sbjct: 288 YHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKV 332
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 545 FTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
F GH V +SP + F S + DG L +W
Sbjct: 382 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIW 414
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Frame = +3
Query: 213 QPVLRIGRRRNLVLLELAPDGGTLIEVQKLEWSDGLFDVTWSGSSDNTAACGAGDGTVIV 392
Q +G L+L + + +V+K +D L V W+ DN G+ D TV +
Sbjct: 306 QEFCSVGDDSCLILWDARTGTNPVTKVEKAHDAD-LHCVDWNPHDDNLILTGSADNTVRL 364
Query: 393 W------RVGCAAPLRVLRAHTSEVCSVDW 464
+ G +P+ H + V V W
Sbjct: 365 FDRRKLTANGVGSPIYKFEGHKAAVLCVQW 394
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 470 RPFAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
R A + ++ D E+ CL TGH + + F P AS S D ++LW
Sbjct: 116 RTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLW 173
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 470 RPFAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
R A + ++ D E+ CL TGH + + F P AS S D ++LW
Sbjct: 116 RTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLW 173
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 31.1 bits (67), Expect = 0.71
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +3
Query: 273 GGTLIEVQKLEWSDGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVC 452
GGT I+ +L S SGSS ++++ G+ CA PL L + V
Sbjct: 26 GGTRIDKGRLGISPSSSSSCSSGSSSSSSSTGSASSIYSELWHACAGPLTCLPKKGNVV- 84
Query: 453 SVDWPRGHLLSASWDTTVNFGTP 521
V +P+GHL D V++ +P
Sbjct: 85 -VYFPQGHL---EQDAMVSYSSP 103
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 351 NTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPR-GHLL-SASWD 497
N G+ D T+ +W V +R+++AH+ + SV + R G L+ SAS D
Sbjct: 141 NLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHD 191
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 QLWDPESE-TCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++WD S CL GH+ V+ F+P S S S D +++W
Sbjct: 110 RIWDARSPYECLKVLRGHTNFVFCVNFNPPS-NLIVSGSFDETIRIW 155
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +2
Query: 539 STFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
S F GHSQ V F ASVS DG + +W SE
Sbjct: 196 SLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISE 234
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +2
Query: 539 STFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
S F GHSQ V F ASVS DG + +W SE
Sbjct: 231 SLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISE 269
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +2
Query: 539 STFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
S F GHSQ V F ASVS DG + +W SE
Sbjct: 215 SLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVWKISE 253
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++WD E C GH+ V + P + S S DG LW
Sbjct: 153 KVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALW 198
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 312 DGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSV 458
+ +FD++W D+ +GD T+ VW V VL HT V S+
Sbjct: 129 NAIFDISWI-KGDSCLLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSM 176
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 312 DGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVL 428
DG+ V WS SS+ G DG + W + A RVL
Sbjct: 191 DGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVL 229
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 312 DGLFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVL 428
DG+ V WS SS+ G DG + W + A RVL
Sbjct: 191 DGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVL 229
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 351 NTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCS-VDWPRGHLLSASWDTTV 506
N GA D ++ VW + ++ L HTS V S + W + LLS S D TV
Sbjct: 278 NRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICWDQ-FLLSCSLDNTV 329
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 366 GAGDGTVIVWR----VGCAAPLRVLRAHTSEVCSVDWPRGHLLSASWDTTV 506
G DG+++VWR C P L HT V S+ L S + D ++
Sbjct: 239 GTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYSGAMDNSI 289
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 461 LAQRPFAERQLGYNRQ-----LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGD 625
L+QRP E+ L + + +WD + + + H + + + F+P +P A+ S D
Sbjct: 311 LSQRPNDEQSLYFGQDYGVFNVWDLRAGKSVFHWELHERRINSIDFNPQNPHVMATSSTD 370
Query: 626 GHLKLW 643
G LW
Sbjct: 371 GTACLW 376
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 521 ESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
E++ + TFTGH +Y SP A+ GD LW
Sbjct: 58 ENDDSVHTFTGHKGELYALACSPTDATLVATGGGDDKAFLW 98
>At1g48540.2 68414.m05428 leucine-rich repeat family protein
Length = 1051
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 518 GPKVDGCIPTGAQQMASGPINGTHFTGMRPENSQRSCTTDPPN 390
G ++ C P G + + S P NG+ +R + S + TT+ P+
Sbjct: 655 GKEILECTPKGTRFLGSQPENGSTIKTLRTDESMKETTTNFPS 697
>At1g48540.1 68414.m05427 leucine-rich repeat family protein
Length = 1063
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 518 GPKVDGCIPTGAQQMASGPINGTHFTGMRPENSQRSCTTDPPN 390
G ++ C P G + + S P NG+ +R + S + TT+ P+
Sbjct: 655 GKEILECTPKGTRFLGSQPENGSTIKTLRTDESMKETTTNFPS 697
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++W+ S TC TFT H+ V TA+ + S S DG ++ W
Sbjct: 374 KVWNVMSGTCFITFTEHTNAV-TALHFMADNHSLLSASLDGTVRAW 418
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 327 VTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRGH--LLSASWDT 500
VT+S S A GA D V VW V HT+ V ++ + + LLSAS D
Sbjct: 355 VTYSPDSQ-LLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDG 413
Query: 501 TV 506
TV
Sbjct: 414 TV 415
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++W+ S TC TFT H+ V TA+ + S S DG ++ W
Sbjct: 414 KVWNVMSGTCFITFTEHTNAV-TALHFMADNHSLLSASLDGTVRAW 458
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 327 VTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRGH--LLSASWDT 500
VT+S S A GA D V VW V HT+ V ++ + + LLSAS D
Sbjct: 395 VTYSPDSQ-LLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDG 453
Query: 501 TV 506
TV
Sbjct: 454 TV 455
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 461 LAQRPFAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKL 640
L+ F + QL LW S ++ GH+ V SP T AS +GD L+L
Sbjct: 327 LSSHGFTQNQL----TLWKYPSMVKMAELNGHTSRVLFMAQSPDG-CTVASAAGDETLRL 381
Query: 641 W 643
W
Sbjct: 382 W 382
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPR---GHLLSA 488
LF +T++ + N A G+ D V VW V + H +V +V W LLS
Sbjct: 217 LFFLTFNWENRNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEVLLSG 276
Query: 489 SWDTTV 506
S D TV
Sbjct: 277 SRDRTV 282
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 360 ACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRGHLLSASWDTTV 506
A G GTV +W V +R + H V ++ W L S S D ++
Sbjct: 225 AIGTSSGTVQIWDVLRCKNIRTMEGHRLRVGALAWSSSVLSSGSRDKSI 273
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 327 VTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRGHLLSASWDTT 503
+ ++GS AA G +G ++ + +RVL+ H V +D+ P G LL AS DTT
Sbjct: 110 LAFNGSGSLLAAAGDDEGIKLI-NTFDGSIVRVLKGHKGPVTGLDFHPNGELL-ASIDTT 167
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = +3
Query: 222 LRIGRRRNLVLLELAPDGGTLIEVQKLEWSDGLFDVTWSGSSDNTAACGAGDGTVIVWRV 401
L G+ R + L P G LI+ K + + DV + + +CG GD V W V
Sbjct: 34 LTCGKDRTIRLWN--PHRGILIKTYKSHGRE-VRDVHVTSDNAKFCSCG-GDRQVYYWDV 89
Query: 402 GCAAPLRVLRAHTSEVCSV 458
+R R H EV +V
Sbjct: 90 STGRVIRKFRGHDGEVNAV 108
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 414 PLRVLRAHTSEVCSVDW-PRGHLLSASWDTTV 506
P R HT E+ + W +G LLS+S D TV
Sbjct: 355 PQHEFRGHTGEILDLSWSEKGFLLSSSVDETV 386
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 506 QLWDP-ESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
+LW S+ C+ F+ H V F+P F S S DG +++W S+
Sbjct: 387 RLWRVGSSDECIRVFS-HKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQ 436
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 461 LAQRPFAERQLGYNRQLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKL 640
L+ F + QL LW S ++ GH+ V SP T AS +GD L+L
Sbjct: 344 LSAHGFTQNQL----TLWKYPSMVKMAELNGHTSRVLFMAQSPDG-CTVASAAGDETLRL 398
Query: 641 W 643
W
Sbjct: 399 W 399
>At3g08570.1 68416.m00994 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 612
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 198 TGS-CHQPVLRIGRRRNLVLLELAPD 272
TGS CH +L++GR + L E+APD
Sbjct: 374 TGSMCHSSLLKVGRIMDAYLAEIAPD 399
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 345 SDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSE 446
S+N A + D T+ +W V P+R R HT+E
Sbjct: 559 SNNELASASTDSTLRLWDVKDNLPVRTFRGHTNE 592
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +3
Query: 327 VTWSGSSDNTAACGAGDGTVIVWRV--GCAAPLRVLRAHTSEVCSVDWPRG--HLLSASW 494
+ WS S + A DG V VW V +R H + V V W + LLS +
Sbjct: 166 IDWSTSHVHLLASAGLDGAVYVWNVWSNDKKKVRAFLHHNAPVKDVKWSKQGLSLLSCGY 225
Query: 495 DTT 503
D T
Sbjct: 226 DCT 228
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 360 ACGAGDGTVIVWRVG-CAAPLRVLRAHTSEVCSVDWPRGH 476
A + D TV ++ + APL VL H EV V+W H
Sbjct: 278 ATASSDSTVALFDLRKLTAPLHVLSKHEGEVFQVEWDPNH 317
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 366 GAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDWPRGHLLSASWDTTVN-FGTPSQKRVSA 542
G+ D T+ VWR+ L ++AH + + G + SAS D V +G +K++ +
Sbjct: 190 GSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAGDGRVYSASADGKVKIWGKEKRKQIES 249
Query: 543 RS 548
S
Sbjct: 250 TS 251
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 536 LSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVRP 667
L+++T + VY +S P FAS+S DG + + ESV+P
Sbjct: 306 LNSYTDYEDSVYGLAWSSREPWIFASLSYDGRVVI----ESVKP 345
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 536 LSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESVRP 667
L+++T + VY +S P FAS+S DG + + ESV+P
Sbjct: 307 LNSYTDYEDSVYGLAWSSREPWVFASLSYDGRVII----ESVKP 346
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = +3
Query: 366 GAGDGTVIVWR----VGCAAPLRVLRAHTSEVCSVDWPRGHLLSASWDTTV 506
G DG+++ WR C P L HT V ++ L S S D T+
Sbjct: 246 GTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKTI 296
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 351 NTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCS-VDWPRGHLLSASWDTTV 506
N G+ D T+ VW + ++ L H+S V S + W + LLS S D TV
Sbjct: 285 NRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLICWDQ-FLLSCSLDNTV 336
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +3
Query: 342 SSDNTA-ACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW-PRGHLLSASWDTTVN 509
S DN A G D + VW P+ HT+ V ++ W P H L AS T +
Sbjct: 344 SYDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPHVHGLLASGGGTAD 401
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW 464
+ D+ WS D G+ D + I+W V + ++L AH V V W
Sbjct: 56 VLDLQWS-PDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 103
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW 464
+ D+ WS D G+ D + I+W V + ++L AH V V W
Sbjct: 115 VLDLQWS-PDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 318 LFDVTWSGSSDNTAACGAGDGTVIVWRVGCAAPLRVLRAHTSEVCSVDW 464
+ D+ WS D G+ D + I+W V + ++L AH V V W
Sbjct: 115 VLDLQWS-PDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSES 658
++WD + C T H V + + S S DG +KLWACSE+
Sbjct: 335 KVWDLNTLQCRMTLKQHIGTVTSLLCWDKC---LISSSLDGTIKLWACSEN 382
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD + F GH++ V + FS + S S D +KLW
Sbjct: 88 RLWDLATGETTRRFVGHTKDVLSVAFSTDN-RQIVSASRDRTIKLW 132
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFA---SVSGDGHLKLW 643
++WD + L TF GH VY+ PH S + DG +K W
Sbjct: 491 KVWDAVTGNKLHTFEGHEAPVYSV--CPHQKENIQFIFSTAVDGKIKAW 537
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFA---SVSGDGHLKLW 643
++WD + L TF GH VY+ PH S + DG +K W
Sbjct: 491 KVWDAVTGNKLHTFEGHEAPVYSV--CPHQKENIQFIFSTAVDGKIKAW 537
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 512 WDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
WD E+ + HS V + + P S S DG KLW
Sbjct: 123 WDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLW 166
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 360 ACGAGDGTVIVWRVG-CAAPLRVLRAHTSEVCSVDWPRGH 476
A + D TV ++ + APL V+ +H EV V+W H
Sbjct: 277 ATASSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNH 316
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 551 GHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSESV 661
GH + ++ + P ASV+ D L++W +ES+
Sbjct: 361 GHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAESI 397
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD + F GH++ V + FS + S S D +KLW
Sbjct: 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSASRDRTIKLW 132
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 444 HWYAPGELSKELHN-RPSKQSLCHHRPHRQPYCLSCLTKSHRKVHRSTLISELRSRSRHQ 268
HW A EL + + S S+ H+ +Q S + + K+ R + SELRS+ R +
Sbjct: 1141 HWLA--ELGPMFFSVKDSDTSMLEHKK-KQKEEKSGMEEEMEKLRRDQVESELRSKERER 1197
Query: 267 EQALKEQ 247
++ K+Q
Sbjct: 1198 KKRAKQQ 1204
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+W + + GH+ V +SP + AS S DG +++W
Sbjct: 515 IWHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIW 559
>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 650
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +1
Query: 505 STLGPRVRNVSQHVHGSFAAGVHGGVLSPFAGHFRL--GLRGRTPQTMGLQRV 657
S G V +SQ +HG G G L GH R+ G R GL+R+
Sbjct: 310 SLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERI 362
>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (5 copies, 2 below cutoff); related to
LACK protective antigen (GI:13625467) [Leishmania
donovani]
Length = 764
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 476 FAERQLGYNRQLWDPESET-CLSTFTG--HSQLVYTAVFSPHSPATFASVSGDGHLKLWA 646
F+E + ++ P+S+T LST H + TA+ + + S+S G K+W
Sbjct: 426 FSEGIVSLKFWVFVPDSKTFSLSTVINQPHREAAITAIALNPARSMAVSISSAGDFKIWV 485
Query: 647 CS 652
CS
Sbjct: 486 CS 487
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++WD E TC F H V TA+ + AS S D + LW
Sbjct: 89 RIWDTEKGTCEVNFNSHKGAV-TALRYNKVGSMLASGSKDNDIILW 133
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLWACSE 655
++WD E++ C+ +GH V++ P S D L+ +A E
Sbjct: 173 RVWDLETQHCMQIVSGHHSEVWSVDTDPEERYVVTG-SADQELRFYAVKE 221
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
++WD + + F GH + V++ FSP+ AS D ++W
Sbjct: 406 RVWDLRTGRSILVFQGHIKPVFSVNFSPNG-YHLASGGEDNQCRIW 450
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
L+D S LST TGHS+ V + F S + S D +++W
Sbjct: 248 LFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVL-TASADKTVRIW 291
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 509 LWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
L+D S LST TGHS+ V + F S + S D +++W
Sbjct: 248 LFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVL-TASADKTVRIW 291
>At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 630
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -2
Query: 491 TGAQQMASGPINGTHFTGMRPENSQRSCTTDPPNNHCAITGPTGSRIV*AA*PS--HIEK 318
+G ++ P+ T T P N Q + T PPN A P + P+ +
Sbjct: 32 SGTPFLSQDPLLATESTDHDPSNHQSTSTPLPPNP--ATGSPLYQENWRSPIPNTPSFNQ 89
Query: 317 SIAPL*FLNFDQGPAIRS 264
S+ PL FLN P IR+
Sbjct: 90 SLVPLGFLNQAPAPRIRA 107
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 506 QLWDPESETCLSTFTGHSQLVYTAVFSPHSPATFASVSGDGHLKLW 643
+LWD + F GH++ V + FS + S S D +KLW
Sbjct: 88 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLW 132
>At5g17980.1 68418.m02109 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1049
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 394 QTITVPSPAPQAAVLSELPDQVTSKSPSLHSNF*TSIKVPPSGASSK 254
+T+ P P P+ + +E P SP L N + PP+ S K
Sbjct: 183 ETVKPPQPPPEESSPAEGPKPDEEASPPLQENATVGGEEPPASESDK 229
>At5g08170.1 68418.m00954 porphyromonas-type peptidyl-arginine
deiminase family protein contains Pfam PF04371:
Porphyromonas-type peptidyl-arginine deiminase
Length = 383
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 246 GSSACQSVILAGGNCQCI-RPSPREPDAIS 160
G + ++LAGGN CI + P EP +++
Sbjct: 350 GIENAREIVLAGGNIHCITQQQPAEPTSVA 379
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 420 RVLRAHTSEVCSVDW--PRGHLLSASWD 497
R L+ HT +V S+DW R ++SAS D
Sbjct: 59 RTLQGHTGKVYSLDWTPERNRIVSASQD 86
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 420 RVLRAHTSEVCSVDW--PRGHLLSASWD 497
R L+ HT +V S+DW R ++SAS D
Sbjct: 59 RTLQGHTGKVYSLDWTPERNRIVSASQD 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,523
Number of Sequences: 28952
Number of extensions: 351381
Number of successful extensions: 1509
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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