Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0665
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.1  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.5  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   3.4  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   5.9  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   5.9  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    26   5.9  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   7.8  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   7.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.8  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   7.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.8  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   7.8  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 163 PRCPPNCSARVDEAFPTAGHSYSKGPRVRGASAALCQP-EHVHVCDGSETEARA 321
           PR P N S R      +  HSY   P     S A   P +H+ +   S  ++RA
Sbjct: 283 PRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDAYGDPNQHLKLRTDSHDDSRA 336


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 519 DYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPL 617
           D+EK  S R   C+KG T YV      P+G+ L
Sbjct: 124 DFEKRCSVR---CLKGHTNYVSSIDFNPLGTLL 153


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 398 TRQTLPGLNPARSYAPIGRATWSP 469
           T Q+ P  NPA   +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 22  NFIIKLSRV-SPFAALIN*QRKLHEA 96
           NF+ KLS + S  AAL+N QRKL +A
Sbjct: 509 NFLQKLSTLDSSLAALVNVQRKLIKA 534


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = -3

Query: 531 PSRNPGGSVVPQGGLLAGASRGDHVALPIGAYERAGFNPGNVCRVCPGQPTVIVL 367
           PS  PG   +PQGG  A  S   +   PIGA       P       P QP   VL
Sbjct: 146 PSGYPGTVPIPQGGYNAHYSSPYNNGYPIGAVNPTSAIPAQP----PAQPVNNVL 196


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 494 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYWG 363
           A F P  A+    L + E  NV  S   T  G     +QLSYWG
Sbjct: 48  ATFTPDLAKRLAVLVKMEK-NVMRSMEVTIRGRRDCARQLSYWG 90


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 300 AVAHVHVLRLAQSSAGSTNARTFG 229
           A+ HV   RLAQ ++GS    T+G
Sbjct: 287 AIHHVRASRLAQLNSGSLKNSTYG 310


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 382 WLARTDPADVARVESRT 432
           WL  TDP+ V+RVE  T
Sbjct: 419 WLQNTDPSTVSRVEVST 435


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 125  VTKRCAQVAIGCSRAAHQTALRGSTKPSPQ-LATLTPKVRAFVEPAL 262
            + K+ A   I C  +A+ T  +  T      L T  P+VRAF+E +L
Sbjct: 1845 MVKQAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIEFSL 1891


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 650 RRIRDFYADLRERRSHRTHREWYH 579
           + IR FY++L ++ SHR  +  YH
Sbjct: 278 KTIRMFYSNLYKKLSHRDAKSIYH 301


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +1

Query: 76  QRKLHEAFQDGVFYKERYEEMCSSGDWMQ 162
           Q  + + + + ++YK++YE+ C   + +Q
Sbjct: 402 QSSVSDLYSERLYYKQKYEQTCQEVERLQ 430


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 362 CPNTITVGWPGQTRQTLPGLNP 427
           C ++  + WPG +RQ L  L+P
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSP 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,230
Number of Sequences: 5004
Number of extensions: 56063
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)