Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0665
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 91 1e-18
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 79 4e-15
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 68 6e-12
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032) 31 0.66
SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16) 31 1.2
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) 30 2.0
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2) 29 4.7
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 29 4.7
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) 28 6.2
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 90.6 bits (215), Expect = 1e-18
Identities = 37/55 (67%), Positives = 48/55 (87%)
Frame = +3
Query: 522 YEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRI 686
++K +R+PGCM GRTMYV+PFSMGPVGSP+SKIG+++TDS YVV MR+MTR+
Sbjct: 114 HKKLYEERYPGCMTGRTMYVLPFSMGPVGSPISKIGIQLTDSEYVVCCMRIMTRM 168
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/71 (43%), Positives = 42/71 (59%)
Frame = +1
Query: 256 SAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDPADVARVESRTF 435
+A L P +H+CDGS+ E +A L +++NC+ TDP DVARVESRTF
Sbjct: 25 NAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDPQDVARVESRTF 84
Query: 436 ICSDRESDVVP 468
IC+ + D VP
Sbjct: 85 ICTKCKDDAVP 95
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +1
Query: 265 LCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDPADVARVESRTFICS 444
LCQP+ +H+CDGS E ++ +L + +N ++ RTDP DVARVES+TFIC+
Sbjct: 169 LCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTDPGDVARVESKTFICT 228
Query: 445 DRESDVVPSARAGQKSALG 501
+ E D VP + G+ +G
Sbjct: 229 ENERDAVPDFKKGKDGVVG 247
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/32 (65%), Positives = 29/32 (90%)
Frame = +3
Query: 591 SMGPVGSPLSKIGVEITDSPYVVYSMRVMTRI 686
+MGPVGSP++KIG+++TDS YVV MR+MTR+
Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYVVCCMRIMTRM 352
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 68.1 bits (159), Expect = 6e-12
Identities = 29/38 (76%), Positives = 35/38 (92%)
Frame = +3
Query: 573 MYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRI 686
MYV+PFSMGPVGSP+SKIG+E+TDS YVV MR+MTR+
Sbjct: 1 MYVMPFSMGPVGSPISKIGIELTDSEYVVCCMRIMTRM 38
>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
Length = 227
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 438 YERAGFNPGNVCRVCPGQPTVIVLGQ 361
Y ++ FNP N CRVC + VLGQ
Sbjct: 32 YAKSLFNPNNFCRVCNANTSKRVLGQ 57
>SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +3
Query: 474 SRRPEVR---PGELHSPPDYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEI 638
S +P +R P +L + P + + +S+ + R M +I FS+GPVGS L IG ++
Sbjct: 53 SNKPPIRLKQPSQLVNLPTH-RGMSEGETKATRMRNM-LIEFSLGPVGSTLGAIGPQV 108
>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
Length = 1222
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 187 QSSLVGSAAASNRHLSTSLRNALYKKHHLEKPRAIFVVNLSERQMEKHE 41
+SSL+ + A ++H LRN Y K +LE P I N+S +++ E
Sbjct: 382 RSSLLSCSVAYHKHSEEFLRNIKYWKQYLEDPDLIKNSNVSTVEIKIQE 430
>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
Length = 287
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 432 RAGFNPGNVCRVCPGQPTVIVLGQ 361
++ FNP N CR+C + VLGQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144
>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
Length = 454
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 389 PGQTRQTLPGLNPARSYAPIGRATW--SPRLAPARSPPWGTTLPPGLREGRVRQIPWL 556
PG L P+ Y P+G W SP P + PW + PG R + +PW+
Sbjct: 126 PGYRPMGTVALVPSSCYRPLGTVPWVPSPWYRPLVTVPWVPS--PGYRP--LGTVPWV 179
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 383 GWPGQTRQTLPGLNPARSYAP-IGRATWSPRLAPARS 490
G PGQ R+++ + P R AP I R T SPR P R+
Sbjct: 41 GTPGQRRKSV-AVTPPRLSAPHIQRGTASPRSVPPRT 76
>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
Length = 373
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 383 GWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARS 490
G PGQ R+++ P S I R T SPR P R+
Sbjct: 41 GTPGQRRKSVAVTPPRLSTPHIQRGTASPRSVPPRT 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,071,109
Number of Sequences: 59808
Number of extensions: 477197
Number of successful extensions: 1538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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