Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0665
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52820.1 68416.m05820 purple acid phosphatase (PAP22) identic...    33   0.18 
At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family...    31   0.54 
At5g38560.1 68418.m04662 protein kinase family protein contains ...    29   2.9  
At4g17540.1 68417.m02623 expressed protein                             29   2.9  
At1g44880.1 68414.m05142 Ulp1 protease family protein similar to...    29   2.9  
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    29   3.8  
At3g52780.1 68416.m05815 purple acid phosphatase (PAP20) identic...    29   3.8  
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp...    28   5.0  
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp...    28   5.0  
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp...    28   5.0  
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS...    28   6.7  
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS...    28   6.7  
At3g04740.1 68416.m00510 expressed protein (SWP1)                      28   6.7  
At5g25265.1 68418.m02995 expressed protein                             27   8.8  
At1g55325.1 68414.m06320 expressed protein                             27   8.8  

>At3g52820.1 68416.m05820 purple acid phosphatase (PAP22) identical
           to purple acid phosphatase (PAP22)GI:20257494 from
           [Arabidopsis thaliana]
          Length = 434

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 184 SARVDEAFPTAGHSYSKGPRVRGASAALCQPEHVHVCDGSETEARA 321
           +ARVD  F    H+Y +  RV    A  C P H+ + DG   E  A
Sbjct: 319 NARVDVVFSGHVHAYERFKRVYNNKADPCGPIHITIGDGGNREGLA 364


>At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 437

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +1

Query: 148 GDWMQPRCPPNCSAR-VDEAFPTAGHSYSKGPRVRGASAALCQPEHVHVCDGSETEARA 321
           GD M     P   A  VD  F    H+Y +  RV    +  C P H+ + DG   E  A
Sbjct: 305 GDEMMAEMEPLLYASGVDIVFTGHVHAYERTKRVNNGKSDPCGPVHITIGDGGNREGLA 363


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 365 PNTITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTLPPG 520
           P+T     P   +   P   P  S +P    T +P   P+ SPP  T  PPG
Sbjct: 99  PSTPATTPPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPG 150


>At4g17540.1 68417.m02623 expressed protein
          Length = 294

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 303 GAVAHVHVLRLAQSSAGSTNARTFGVRVASCGEGFVD 193
           G   HV      ++S  STN+RTFG R       F+D
Sbjct: 166 GHKKHVDTKASLKNSGSSTNSRTFGTRTEKVINSFLD 202


>At1g44880.1 68414.m05142 Ulp1 protease family protein similar to
           At5g28170, At1g35110, At3g42530, At4g19320, At5g36020,
           At4g03970, At3g43010, At2g10350; contains Pfam profile
           PF02902: Ulp1 protease family, C-terminal catalytic
           domain
          Length = 1038

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 494 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSY 369
           +D  PAR  G  +LS +EHM V  S  +    +   NQ+ ++
Sbjct: 842 SDSSPARERGKPTLSEAEHMEVLVSLLSQKLATTLTNQRAAF 883


>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +2

Query: 410 LPGLNP-ARSYAPIG---RATWSPRLAPARSPPWGTTLPP 517
           LPGL    +S+ P+G    A+  P  APA+ PP     PP
Sbjct: 202 LPGLREYVKSHYPLGPVWNASGKPASAPAKGPPGAPAPPP 241


>At3g52780.1 68416.m05815 purple acid phosphatase (PAP20) identical
           to purple acid phosphatase GI:20257491 from [Arabidopsis
           thaliana]
          Length = 427

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 187 ARVDEAFPTAGHSYSKGPRVRGASAALCQPEHVHVCDGSETEARA 321
           ARVD  F    H+Y +  RV       C P ++++ DG   E  A
Sbjct: 321 ARVDLVFAGHVHAYERFSRVYQDKFDKCGPVYINIGDGGNLEGLA 365


>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein related to DAN26 [Homo
           sapiens] gi|1770394|emb|CAA69591
          Length = 650

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 389 PGQTRQTLPGLNPARSYA---PIGRATWSPRLAPA-RSPPWGTTLPPGLREGRVRQI 547
           P  T+Q +P + P  ++    P+  +   P   PA   PP     PPGL  G VR++
Sbjct: 450 PVATQQFIPNVMPPGAFPGSIPLNASVPPPTQPPAGEKPPPYPLFPPGLIPGMVRKM 506


>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein related to DAN26 [Homo
           sapiens] gi|1770394|emb|CAA69591
          Length = 650

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 389 PGQTRQTLPGLNPARSYA---PIGRATWSPRLAPA-RSPPWGTTLPPGLREGRVRQI 547
           P  T+Q +P + P  ++    P+  +   P   PA   PP     PPGL  G VR++
Sbjct: 450 PVATQQFIPNVMPPGAFPGSIPLNASVPPPTQPPAGEKPPPYPLFPPGLIPGMVRKM 506


>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein related to DAN26 [Homo
           sapiens] gi|1770394|emb|CAA69591
          Length = 650

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 389 PGQTRQTLPGLNPARSYA---PIGRATWSPRLAPA-RSPPWGTTLPPGLREGRVRQI 547
           P  T+Q +P + P  ++    P+  +   P   PA   PP     PPGL  G VR++
Sbjct: 450 PVATQQFIPNVMPPGAFPGSIPLNASVPPPTQPPAGEKPPPYPLFPPGLIPGMVRKM 506


>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 357

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 462 GPLGSRRPEVRPGELHSPPDYEKAVSDRFP 551
           G + +R P    GE  SPP YEK    R P
Sbjct: 258 GAVRNRSPRKGRGESRSPPPYEKRRESRSP 287


>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 356

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 462 GPLGSRRPEVRPGELHSPPDYEKAVSDRFP 551
           G + +R P    GE  SPP YEK    R P
Sbjct: 258 GAVRNRSPRKGRGESRSPPPYEKRRESRSP 287


>At3g04740.1 68416.m00510 expressed protein (SWP1)
          Length = 1703

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 109  VFYKERY--EEMCSSGD--WMQPRCPPNCSARVDEAFP 210
            + Y++R+  +  C +GD  W+QP  PP   A +  + P
Sbjct: 1232 IIYRKRFAVDMRCFAGDQVWLQPATPPKGGASIGGSLP 1269


>At5g25265.1 68418.m02995 expressed protein
          Length = 366

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 434 SYAPIGRATWSPRLAPARSPPWGTTL-PPGLREGRVRQIPWLYERTHNV 577
           +Y  IG   +  R   ++ PP   T+ PPG+ +  V  +  + E T N+
Sbjct: 313 TYGKIGEWRFDKRSYDSKPPPRNLTMPPPGVSQSVVTLVKMINEATANI 361


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 486 EVRPGELHSPPDYEKAVSD--RFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVV 659
           EV    + S P  + ++S    F   +K   M       G V +P+S+I      SPY+ 
Sbjct: 586 EVLHSSITSVPSNQMSISSTGEFDHLLKAEAMMTFAPEYGAVEAPMSEISSTFFKSPYLP 645

Query: 660 YSMRV 674
            S +V
Sbjct: 646 KSHKV 650


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,494
Number of Sequences: 28952
Number of extensions: 322433
Number of successful extensions: 1098
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)