Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0664
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 32 0.55
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 30 2.2
01_06_0486 - 29729333-29729356,29729856-29730106,29730364-297304... 30 2.2
11_01_0528 - 4148737-4149483,4149618-4150147,4150238-4150736,415... 29 3.9
11_04_0410 - 17347853-17347978,17348289-17348399,17348481-173488... 29 5.1
11_04_0013 - 12208818-12209344,12209976-12210198 29 5.1
11_01_0149 + 1247985-1248207,1248982-1249508 29 5.1
10_06_0106 + 10827301-10827523,10828298-10828824 29 5.1
09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135 29 5.1
02_04_0082 - 19559626-19560152,19560927-19561149 29 5.1
02_02_0329 + 9008948-9009089,9009454-9009638 29 5.1
10_01_0268 + 2864524-2864871 28 6.8
01_05_0758 + 24954701-24954793,24954907-24955086,24955676-249558... 28 6.8
01_06_0385 + 28914888-28916342 23 7.7
03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367... 28 9.0
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 391 RVMEEIEREGIKIYPLPDCDSDEDEDYKEQVRQLK 495
R++ E+ G+ I P+PD EDED ++ +L+
Sbjct: 835 RIIIELSEVGVSIEPVPDLAQSEDEDINSEICKLE 869
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +1
Query: 436 LPDCDSDEDEDYKEQVRQLK----EAVPSQCAARASSWRC 543
LPDC + E+E+ + R+ K EA+ S+ AA AS RC
Sbjct: 104 LPDCTASEEEEEDGKSRKRKRGRDEAILSEIAADASCIRC 143
>01_06_0486 -
29729333-29729356,29729856-29730106,29730364-29730466,
29730571-29730663,29730773-29730905,29731184-29731272,
29731385-29731553,29731930-29732016,29732388-29732506,
29732554-29732706
Length = 406
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 287 RGFNPCPNGDMSRNSNECDCPQCYDGLGRSRLEEIFRTARQCIELWIEN 141
RG+ PC + R+S DCP C +G G + E + A +C+ +W E+
Sbjct: 153 RGYTPCKQCGIDRSS--LDCPMC-NGKG---IRECVQCAGECV-IWQES 194
>11_01_0528 -
4148737-4149483,4149618-4150147,4150238-4150736,
4152041-4152043
Length = 592
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 155 IQYIDEQFERFLRDESGLNRRN-IVDNRIHCCFYSYH 262
I+ I E + RF++D + L+RRN ++ +HC H
Sbjct: 27 IELIKELYHRFIKDNNFLSRRNSALNTPLHCAAREGH 63
>11_04_0410 -
17347853-17347978,17348289-17348399,17348481-17348840,
17348913-17349105,17349239-17349279
Length = 276
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 376 QRLKSRVMEEIEREGIKIYP---LPDCDSDEDEDYKEQVRQLKEAVPSQCAARASSWRCA 546
+++ + EE +R K+Y +P D DED+++ V+ L A P + WR
Sbjct: 101 KKVPQMLFEEKKRATNKLYKKGKVPAEDVDEDDNHWPTVQALVSAKPKDFSVTEEGWRLL 160
Query: 547 GGGCAAASTP 576
C STP
Sbjct: 161 ---CEHWSTP 167
>11_04_0013 - 12208818-12209344,12209976-12210198
Length = 249
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 295 EFMKQLHNKVNIVPVIAKADCLTKKEVQRLKSRVMEEIEREGIKIY 432
E++K + K ++ +A+ L +KE + + +EEI E +KIY
Sbjct: 194 EYLKAEYEKGALIFTRDEANALERKEAEARYEKSLEEIRDEFLKIY 239
>11_01_0149 + 1247985-1248207,1248982-1249508
Length = 249
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 295 EFMKQLHNKVNIVPVIAKADCLTKKEVQRLKSRVMEEIEREGIKIY 432
E++K + K ++ +A+ L +KE + + +EEI E +KIY
Sbjct: 194 EYLKAEYEKGALIFARDEANALERKEAEARYEKSLEEIRDEFLKIY 239
>10_06_0106 + 10827301-10827523,10828298-10828824
Length = 249
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 295 EFMKQLHNKVNIVPVIAKADCLTKKEVQRLKSRVMEEIEREGIKIY 432
E++K + K ++ +A+ L +KE + + +EEI E +KIY
Sbjct: 194 EYLKAEYEKGALIFARDEANALERKEAEARYEKSLEEIRDEFLKIY 239
>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
Length = 485
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 484 RQLKEAVPSQCAARASSWRCAGGGCAAAST 573
R L++ +CA R + C GGCA AST
Sbjct: 200 RLLRDCGLRRCAIRLAGVACVLGGCAGAST 229
>02_04_0082 - 19559626-19560152,19560927-19561149
Length = 249
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 295 EFMKQLHNKVNIVPVIAKADCLTKKEVQRLKSRVMEEIEREGIKIY 432
E++K + K ++ +A+ L +KE + + +EEI E +KIY
Sbjct: 194 EYLKAEYEKGALIFARDEANALERKEAEARYEKSLEEIRDEFLKIY 239
>02_02_0329 + 9008948-9009089,9009454-9009638
Length = 108
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 628 GPCSLPTCRTSKRSHRKFTMRTIVRRDSPAPAKFR 732
GPC C T+ R ++ + + + RD+ AP FR
Sbjct: 71 GPCFPMLCLTATRKSLQYLLASALLRDANAPTVFR 105
>10_01_0268 + 2864524-2864871
Length = 115
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 343 AKADCLTKKEVQRLKSRVMEEIEREGIKIYPLPDC 447
A A + +V+ LK+ + +E++G K+ P PDC
Sbjct: 25 AAAGTECQNDVEVLKTTCYKFVEKDGPKLQPSPDC 59
>01_05_0758 +
24954701-24954793,24954907-24955086,24955676-24955870,
24955982-24956089,24956211-24956288,24956383-24956464,
24956624-24956783,24956877-24957179,24957295-24957513,
24957598-24958057,24958175-24958240,24958332-24958511
Length = 707
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +1
Query: 325 NIVPVIAKADCLTKKEVQRLKSRVMEEIEREGIKIYPLPDCDSDEDEDYKEQVRQLKEAV 504
+I+ + +++ LT E +LK + E +E+ + D D DE Y+E V + A+
Sbjct: 173 DIIDIEQQSNSLTVHET-KLKVDLTEYVEKHEFVFDAVLDEDVSNDEVYRETVEPVVPAI 231
Query: 505 PSQCAARASSWRCAGGG 555
++ A ++ G G
Sbjct: 232 FNRTKATCFAYGQTGSG 248
>01_06_0385 + 28914888-28916342
Length = 484
Score = 23.4 bits (48), Expect(2) = 7.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 364 KKEVQRLKSRVMEEIEREGIKIYPLPDCDSDE 459
++EV + + + I+ + LPD DSDE
Sbjct: 292 EEEVDEITESLCDRIKSLACPVSALPDWDSDE 323
Score = 23.0 bits (47), Expect(2) = 7.7
Identities = 11/42 (26%), Positives = 17/42 (40%)
Frame = +1
Query: 445 CDSDEDEDYKEQVRQLKEAVPSQCAARASSWRCAGGGCAAAS 570
CDS+ + + R V S A+ GGGC ++
Sbjct: 336 CDSEAARESIDVARSAPSKVSSAATVPAAEVVLVGGGCCPSN 377
>03_01_0480 -
3676529-3676687,3676767-3676931,3677044-3677220,
3678170-3678273,3678700-3678843,3679831-3679898,
3680059-3680162,3680759-3680767,3681572-3681657,
3681918-3683373
Length = 823
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +2
Query: 116 GDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIVDNRIHCCFYSYHRLDTGXXXXXX 295
GD + ++ + S+ ++ + R L D+SG+N + R+H HRL G
Sbjct: 451 GDYVLLSNIYASVGEWFGSEKMRKLMDDSGVN-KEADSERLH------HRLLFGFLVKQI 503
Query: 296 XXXNSCTTKLTSYRLSPKRTV---SLRKKFSD*N 388
SC + + Y +++ +LR K+ D N
Sbjct: 504 NISPSCISYIKEYNPKKSKSIKGYALRDKYHDLN 537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,381
Number of Sequences: 37544
Number of extensions: 314919
Number of successful extensions: 1467
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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