Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0664
         (741 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    27   0.61 
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    26   1.1  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            26   1.4  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    26   1.4  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    26   1.4  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       26   1.4  
AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.           23   7.5  
AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         23   9.9  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 314  CSCFMNSISRGFNPCPNGDMSRNSNECDCPQCYD 213
            C C  N   R  + C      R+    DCP CY+
Sbjct: 1005 CPCNDNVEGRRCDRCKENKYDRHQGCLDCPACYN 1038



 Score = 24.6 bits (51), Expect = 3.2
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 314  CSCFMNSISRGFNPCPNGDMS-RNSNECDCPQCYDGLG 204
            C C  N I R  N C NG  +  + N C+   C D +G
Sbjct: 909  CHCKPNVIGRTCNECKNGYWNIVSGNGCESCNC-DPIG 945


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 364  KKEVQRLKSRVMEEIER----EGIKIY-PLPDCDSDEDEDYKEQVRQLKEAVPSQCAARA 528
            ++EV RL    + E +R    E    Y P P  DSD+D+D  E  RQ   A  +  AAR 
Sbjct: 1090 RREVNRLAVARLRERQRAARAEMHGAYQPAPSNDSDDDDDDVEN-RQATNAASTSEAART 1148

Query: 529  SS 534
            ++
Sbjct: 1149 AA 1150


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 433 PLPDCDSDEDEDYK--EQVRQLKEAVPSQCAARASSWRCA 546
           PL + D +E+ED +    VRQ + + P++ ++ ASS   A
Sbjct: 41  PLDEVDGEEEEDEEEGPGVRQKQSSPPARLSSSASSTAAA 80


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 209 NRRNIVDNRIHCCFYSYHRLDT 274
           N R ++   +H CFY Y+   T
Sbjct: 368 NHRKLLSKDLHACFYPYYSTTT 389


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 209 NRRNIVDNRIHCCFYSYHRLDT 274
           N R ++   +H CFY Y+   T
Sbjct: 368 NHRKLLSKDLHACFYPYYSTTT 389


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 305 FMNSISRGFNP-CPNGDMSRNSNECDCPQC 219
           F+NSI    N  CP G  ++ S +  CPQC
Sbjct: 159 FINSIGIQCNTTCPEGFEAQLSEQHCCPQC 188


>AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.
          Length = 259

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 671 CDLLEVLHVGNEHGPEFDEVAVLRVLDL 588
           C+L E +++  +H PE D   ++  +D+
Sbjct: 90  CELEEEVYLQPKHAPEMDGSELMEAVDV 117


>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 679 TSCVTSWRSCMWVMSMVLSLMKSQC 605
           TSC  S RS + ++++ L+L  S C
Sbjct: 31  TSCWPSRRSRLCIIALSLTLSSSSC 55


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,120
Number of Sequences: 2352
Number of extensions: 11924
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)