Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0664
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27010.1 68417.m03885 expressed protein ; expression support... 30 1.9
At3g04030.2 68416.m00425 myb family transcription factor contain... 29 2.4
At3g04030.1 68416.m00424 myb family transcription factor contain... 29 2.4
At1g51745.1 68414.m05831 expressed protein 29 3.2
At2g39650.1 68415.m04862 expressed protein contains Pfam profile... 29 4.3
At4g29790.1 68417.m04242 expressed protein 28 5.7
At3g61210.1 68416.m06850 embryo-abundant protein-related similar... 28 5.7
At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase ... 28 7.5
At4g09520.1 68417.m01565 2,3-biphosphoglycerate-independent phos... 28 7.5
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai... 28 7.5
At3g14395.1 68416.m01821 expressed protein 27 9.9
At2g19390.1 68415.m02262 expressed protein 27 9.9
At1g15420.1 68414.m01850 expressed protein 27 9.9
>At4g27010.1 68417.m03885 expressed protein ; expression supported by
MPSS
Length = 2535
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 241 LLFLLISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLTKKEVQRLKSRVMEEIEREG 420
L FLL+ +G L+ +D+E K +H+ + +I L E L + +I REG
Sbjct: 1821 LHFLLLCSYGATLREIDLEIYKLMHD----IKLIEAEQTLNVSETDYLWGKAALKI-REG 1875
Query: 421 IKIYPLPDCDSDEDEDYKEQVRQLKEAV-PSQCA 519
+ C D ED ++ + + V P CA
Sbjct: 1876 LSQDASDVCQVDLVEDVRQGLIKENLCVDPKICA 1909
>At3g04030.2 68416.m00425 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 393
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +1
Query: 277 LKPLDIEFMKQLHNKVNIVPVIAKADCLTKKEVQRLKSRVMEEIEREGIKIYPLPDCDSD 456
L+P +++ + + N P + CLT E + S+++E R G++ Y + D S+
Sbjct: 226 LEPKELQNLCSQQMQTNYPPDCSLESCLTSSEGTQKNSKMLEN-NRLGLRTY-IGDSTSE 283
Query: 457 EDEDYKEQVRQLKE 498
+ E +E + Q E
Sbjct: 284 QKEIMEEPLFQRME 297
>At3g04030.1 68416.m00424 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 388
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +1
Query: 277 LKPLDIEFMKQLHNKVNIVPVIAKADCLTKKEVQRLKSRVMEEIEREGIKIYPLPDCDSD 456
L+P +++ + + N P + CLT E + S+++E R G++ Y + D S+
Sbjct: 221 LEPKELQNLCSQQMQTNYPPDCSLESCLTSSEGTQKNSKMLEN-NRLGLRTY-IGDSTSE 278
Query: 457 EDEDYKEQVRQLKE 498
+ E +E + Q E
Sbjct: 279 QKEIMEEPLFQRME 292
>At1g51745.1 68414.m05831 expressed protein
Length = 635
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 283 PLDIEFMKQLH-NKVNIVPVIAKADCLTKKEVQRLKSR 393
PL +E +++ + N + + PV+AKA L KK ++ KSR
Sbjct: 519 PLSVEILEEDYSNGMVMPPVVAKAKSLPKKNGKKKKSR 556
>At2g39650.1 68415.m04862 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 291
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 104 TPG-YGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRN 220
+PG +G +N + +Q ++++ ERF++ +SG +RRN
Sbjct: 253 SPGLHGQCAENLKRLQFALQ-VEQEAERFMKKKSGFSRRN 291
>At4g29790.1 68417.m04242 expressed protein
Length = 1211
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 370 EVQRLKSRVMEEIEREGIKIYPLPDCDSDEDEDYKEQVRQLKEAV 504
E + ++ E + GI + P+P + EDE + ++ L+EA+
Sbjct: 835 ETLGIDEKIYMEAQSIGICLDPMPSISNVEDEGIVDDIKTLEEAI 879
>At3g61210.1 68416.m06850 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 261
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 405 FFHNPRFQSLNFFLSETVRFGDNRYDVNFVVQLFHELNIKRL*PVSKR 262
++H P S + + T+ G+N D+ Q H ++KR P+ KR
Sbjct: 82 YYHTPSSMSDDDLV--TLLGGENSIDIIIAAQALHYFDLKRFYPIVKR 127
>At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase
(PYR4) identical to SP|O04904 Dihydroorotase,
mitochondrial precursor (EC 3.5.2.3) (DHOase)
{Arabidopsis thaliana}
Length = 377
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/53 (20%), Positives = 28/53 (52%)
Frame = +2
Query: 26 NQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFER 184
+Q +K D S+ +++ R V++ LT+ + + + D +++ + F+R
Sbjct: 14 SQKLKFDRSSEKVKTRAVRMELTITQPDDWHLHLRDGDLLHAVVPHSASNFKR 66
>At4g09520.1 68417.m01565 2,3-biphosphoglycerate-independent
phosphoglycerate mutase family protein /
phosphoglyceromutase family protein contains similarity
to 2,3-bisphosphoglycerate-independent phosphoglycerate
mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
(BPG-independent PGAM 1) (aPGAM 1) (aPGAM-Mj1).
(Swiss-Prot:Q59007) [Methanococcus jannaschii]; contains
weak hit to Pfam profile PF01676: Metalloenzyme
superfamily
Length = 492
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -2
Query: 350 ALAITGTMLTLLCS---CFMNSISRGFNPCPN 264
AL TG TLL S N++S NPCPN
Sbjct: 276 ALGATGDYRTLLTSKAIAIANALSAPLNPCPN 307
>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
aminoacyl-transfer RNA synthetases class-II signature 1,
PROSITE:PS00179
Length = 766
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +1
Query: 364 KKEVQRLKSRVMEEIEREGIKIYPLPDCDSDEDEDYKEQVRQLKEAVPSQCAARASS 534
KKE +R + R EE+ E D DS++D+ E+ E+ P QC A SS
Sbjct: 64 KKEYKREQHRRREEVVEE--------DEDSEDDDQEDEENDGDDESNPKQCVAGGSS 112
>At3g14395.1 68416.m01821 expressed protein
Length = 75
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 451 SDEDEDYKEQVRQLKEAVPSQCAARASSWRCA 546
S+ED D+ E VR E + S C +SSW A
Sbjct: 34 SEEDFDFDELVRATAERLSSSCPG-SSSWSLA 64
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 382 LKSRVMEEIEREGIKIYPLPDCDSDEDEDYKEQVRQLKEAV 504
+ ++ E + GI I +P + EDE +++++L+EA+
Sbjct: 843 IDEKIYLEAQSLGISIDLMPSISNVEDEGIADEIKKLEEAI 883
>At1g15420.1 68414.m01850 expressed protein
Length = 278
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 397 MEEIEREGIKIYPLPDCDSDEDEDYKEQVRQLKEA 501
++E E EG IY D D DE+E +E + +EA
Sbjct: 222 LDEEEDEGPVIYEDKDSDEDEEEGIEEAMETDEEA 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,093,577
Number of Sequences: 28952
Number of extensions: 244811
Number of successful extensions: 1024
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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